LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4035g00010	ATGTATCACGGGCCGGTCTATGCAGGGCCCGTTGTCATGCATGAATTAGGATATATTGTTGATGGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGCCCTACCTTCAAGAAGAAGGCAAAGAAGATCCGAACTTCTGTCACTTTCCACAGGCCTAAGACATTGAAGAAGGATAGGAACCCCAAGTACCCACGCATTAGTGCGCCCCCAAGGAACAAGCTTGATCATTACCAGATTCTGAAGTTCCCTCTGACCACTGAGTCTGCTATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTTGACCTGCGCGCTGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGGACCAAGAAGGCCTATGTCAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATCGGGATTATCTAA	507	0.4675	MYHGPVYAGPVVMHELGYIVDGSKKGDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4035g00010	168	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	85	161	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Mupr4035g00010	168	ProSitePatterns	Ribosomal protein L23 signature.	146	161	IPR001014	GO:0019843
	Mupr4035g00010	168	Pfam	Ribosomal protein L23, N-terminal domain	29	78	IPR005633	-
	Mupr4035g00010	168	Pfam	Ribosomal protein L23	88	150	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Mupr4035g00010	168	Gene3D	-	49	168	IPR012677	-
	Mupr4035g00010	168	FunFam	60S ribosomal protein L23a	48	168	-	-
	Mupr4035g00010	168	NCBIfam	50S ribosomal protein L23	92	168	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Mupr4035g00010	168	PANTHER	60S RIBOSOMAL PROTEIN L23A	24	168	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Mupr4035g00010	168	Hamap	50S ribosomal protein L23 [rplW].	88	168	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4035g00010	Mupr-Chr4035	41699	43373	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4035g00010	41	168	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	89.844	2.23e-66	197

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4035g00010	K02893		-	jre:109021970	284.263