LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4025g00002	ATGATGAATCCTCAAAATAGTCCATCGGAAGAATTATGTTTTGAGTGCAAGAGCTGTGAGCCCAAGTTCGCATTGGATGGACACAACACTAACCACAAGAAGCCAAAACTTGAGGATGGGAATGGGAATGGAAAACAACATACAAAAATACACGAGTGTTCAATTTGTGGTGAGACATTCTCTCGGGGACAGGCATTGGGAGGCCACATGAGAAAACACAAAGATCGACTCTTAAAGAGATCCAATAATAGTAGTCAAAAGATTATGTTCCACGACCTCAACTTGACTCCTTTGCAGAATGACTTGAAAAGTCGCAGTTGCGAATTGAATAGGAATGACTTTAGAATTTCTACATCAGATCAGAAAATCACAAGCATATATAACAATGAAGTTTGA	396	0.3914	MMNPQNSPSEELCFECKSCEPKFALDGHNTNHKKPKLEDGNGNGKQHTKIHECSICGETFSRGQALGGHMRKHKDRLLKRSNNSSQKIMFHDLNLTPLQNDLKSRSCELNRNDFRISTSDQKITSIYNNEV	131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4025g00002	131	ProSitePatterns	Zinc finger C2H2 type domain signature.	53	73	IPR013087	-
	Mupr4025g00002	131	PANTHER	ZINC FINGER PROTEIN ZAT5	9	101	-	-
	Mupr4025g00002	131	MobiDBLite	consensus disorder prediction	24	48	-	-
	Mupr4025g00002	131	ProSiteProfiles	Zinc finger C2H2 type domain profile.	51	73	IPR013087	-
	Mupr4025g00002	131	Gene3D	Classic Zinc Finger	32	107	-	-
	Mupr4025g00002	131	SUPERFAMILY	beta-beta-alpha zinc fingers	48	75	IPR036236	-
	Mupr4025g00002	131	SMART	c2h2final6	51	73	IPR013087	-
	Mupr4025g00002	131	FunFam	Zinc finger protein	48	74	-	-
	Mupr4025g00002	131	Pfam	C2H2-type zinc finger	51	75	-	-
	Mupr4025g00002	131	MobiDBLite	consensus disorder prediction	26	46	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4025g00002	Mupr-Chr4025	5138	5740	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4025g00002	14	103	C2H2 Transcription Factor Family	AT2G37430	42.241	1.84e-20	80.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Mupr4025g00002		zf-C2H2_6	1.3e-11	CL0361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4025g00002	-		-	cann:107873826	106.686