Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4023g00001 ATGGAATTAAGAATTATATATTCACCTTCTAGAAGAGTGTTGGAGCTGAAATTATTCTTTTATTCAGACACTGAAGAGGAGTGTCTGACACGTGTTGAACATGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGCCGTAAAGGAAAGCCCAAGTTTTGTCCAGTTAGACTTTCCAATGATGAATCATCCTTAATCTGGATTACAAGTAGTGGAGAAAGAAAGCTGAAGTTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGTGAGATTTCTGTCCTTATATCTAATTGCATACAATACTATGGCATTCTTTGTTATTAACAAAGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTGTCATTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTTTGGATTGCTGGCCTCAAAGCATTGATATCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGAGGCCTCATTCTTGATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGGAAGTTCTGCTAGCACGTCACGAGGCATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCACCAAAGTCCTTTCAACCTGACAACACAATTTCTGAAAGGTCACATGCGCCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCCAGTACATCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCTGTGAAAATGTTAAAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTTCCCAGACCACTGGAATCCAATGTAGTTTTAGATGTACATCATATTGCATGTGGTGTTAAACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTTGGCCATGGAGTTGGAAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTGTTGATTTTGTTTCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGTCTGGGGAACTATTTACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCACGGCAGTGATGTCTGTCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGTCAGCTGTTTACATTTGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGATAGGGGAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGATTGAAGACAATAGCTGTTGCATGTGGAGTGTGGCACACTGCAGCTATTGTTGAGGTTATTGCAACACACTCTGGTACAAGTATATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAAGCACGTCTTAAACCTACTTGTGTGCCTGCGCTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACTGCAGGCCTGACAACATCTGGACGTGTTTTTACTCTGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAATCTGATGGAAAAGTTCCTTGCTTGGTCGGAGACAAGATTGCTGGGGAATCTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCCGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGCGCAAATGGGAGATTAGGTCACGGAGATATTGAAGATCGAAAAACACCAGCTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGTTTCACTAGAAAGAGGCACAATTGTTATAACTGTGGACTTGTCCACTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCGCTGGCGCCTAATCCTGGCAAGCCATATCGGGTGTGTGACTCTTGTTATGCAAAATTGAACAAGGTTGCAGAAGCTAGCAATAATAATAGAAAGAATGCCTTGCCTCGTCTGTCAGGTGAAAACAAGGATAGGTTAGATAAGTCTGACCTAAGATTGTCCAAGGCAGCAATTCCTTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAGCAAGGAAAGAAGGGCGATGCATTCTCACTGGTTCGCACCTCACAACCGCCTTCTTTGCTACAGTTGAAAGATGTTGTCTTGTCCACTGCTCTTGATCTTAGACGAACAGTTCCAAGGCCAGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACGCCTATTCCAACAACTTCAGGACTTTCCTTCTCCAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAGTTGGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAGGCTATGGCACTGGCTGCTGAGGAATCAGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTTTATGACGCTGAGAACATTAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCACTCTAGGGAAGAGTCAATCAGTGGCTCTAGTTTGGCCTCCATGGGACTTGATTCCTCTCTATTGAATAGAACTGCAGGGAATTCGCCAGGAACTTATGGAACTAATCTTCACCAGCAAATCCGGAGCCCTATTACCTCTAATGGTACCACTAATTATCCACATGTTAAATTGCCAAATGGTGGTGGTGTGATTCAGGCAAGCAGTGGTAGCATGTCAGACACTGTTGATGGTAGGGATTCTGGTAATTTCCATGACAACGAGAGTGGTTTGAAGTCCAGGAATGCTGCACCAGCTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTCGTGGCACTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCAGAGAACCGGGACAAGGTGTATGAAAGATACAACGTTCGCAGCACAGACAAGTCTGCCACTCAAGGGGCACGTAGTTCTGAGGGTGTCGGTTCGCCTGTTTCCCAAACTTAG 3477 0.4372 MELRIIYSPSRRVLELKLFFYSDTEEECLTRVEHALIALKKGAQLLKYGRKGKPKFCPVRLSNDESSLIWITSSGERKLKLSSVSRIIPGQRTVRFLSLYLIAYNTMAFFVINKAVFQRYLRPEKDYLSFSLIYSNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILDDSRDLTSNSPSGSSASTSRGISSPDISVSLPNTSPKSFQPDNTISERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVKVGADKNVNYFSPRADVLLPRPLESNVVLDVHHIACGVKHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVSCGEFHSCAVTMSGELFTWGDGTHNAGLLGHGSDVCHWIPKRIAGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRGNVSYPREVESLSGLKTIAVACGVWHTAAIVEVIATHSGTSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTLGSTVYGQLGNPQSDGKVPCLVGDKIAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNNNRKNALPRLSGENKDRLDKSDLRLSKAAIPSNMDLIKQLDSKAAKQGKKGDAFSLVRTSQPPSLLQLKDVVLSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKKTQEAMALAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPAYLPNGLEPNGIHYPDSNGEQHSREESISGSSLASMGLDSSLLNRTAGNSPGTYGTNLHQQIRSPITSNGTTNYPHVKLPNGGGVIQASSGSMSDTVDGRDSGNFHDNESGLKSRNAAPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSATQGARSSEGVGSPVSQT 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 334 IPR000408 -
Mupr4023g00001 1158 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Mupr4023g00001 1158 Gene3D - 30 168 IPR011993 -
Mupr4023g00001 1158 ProSiteProfiles BRX domain profile. 1078 1133 IPR013591 -
Mupr4023g00001 1158 MobiDBLite consensus disorder prediction 1135 1158 - -
Mupr4023g00001 1158 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 665 727 IPR017455 -
Mupr4023g00001 1158 MobiDBLite consensus disorder prediction 821 854 - -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Mupr4023g00001 1158 SUPERFAMILY PH domain-like 34 162 - -
Mupr4023g00001 1158 SMART fyve_4 659 728 IPR000306 GO:0046872
Mupr4023g00001 1158 CDD FYVE_like_SF 670 723 - -
Mupr4023g00001 1158 FunFam PH, RCC1 and FYVE domains-containing protein 1 245 494 - -
Mupr4023g00001 1158 Pfam FYVE zinc finger 661 727 IPR000306 GO:0046872
Mupr4023g00001 1158 Coils Coil 861 902 - -
Mupr4023g00001 1158 Gene3D - 495 657 IPR009091 -
Mupr4023g00001 1158 SUPERFAMILY RCC1/BLIP-II 273 662 IPR009091 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 442 490 IPR000408 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 504 551 IPR000408 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 335 383 IPR000408 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 556 605 IPR000408 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 610 657 IPR000408 -
Mupr4023g00001 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 386 438 IPR000408 -
Mupr4023g00001 1158 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 76 932 - -
Mupr4023g00001 1158 SUPERFAMILY FYVE/PHD zinc finger 661 735 IPR011011 -
Mupr4023g00001 1158 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 480 490 IPR000408 -
Mupr4023g00001 1158 Pfam Transcription factor regulating root and shoot growth via Pin3 1077 1132 IPR013591 -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 386 IPR000408 -
Mupr4023g00001 1158 MobiDBLite consensus disorder prediction 960 982 - -
Mupr4023g00001 1158 Pfam Transcription factor BRX N-terminal domain 912 947 IPR027988 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 444 458 IPR000408 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 604 625 IPR000408 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 428 444 IPR000408 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Mupr4023g00001 1158 PRINTS Chromosome condensation regulator RCC1 signature 546 564 IPR000408 -
Mupr4023g00001 1158 FunFam Putative E3 ubiquitin-protein ligase HERC1 667 735 - -
Mupr4023g00001 1158 CDD PH_PLC_plant-like 30 163 - -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 441 IPR000408 -
Mupr4023g00001 1158 Coils Coil 910 937 - -
Mupr4023g00001 1158 MobiDBLite consensus disorder prediction 186 245 - -
Mupr4023g00001 1158 Gene3D - 229 494 IPR009091 -
Mupr4023g00001 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 734 IPR013083 -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Mupr4023g00001 1158 Pfam Pleckstrin homology domain 37 162 IPR001849 -
Mupr4023g00001 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 609 660 IPR000408 -
Mupr4023g00001 1158 FunFam PH, RCC1 and FYVE domains-containing protein 1 495 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4023g00001 Mupr-Chr4023 6489 14641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4023g00001 921 1143 Major Intrinsic Protein MIP AT1G31880 30.493 8.43e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4023g00001 - - gmx:100805364 1989.16