Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4013g00003 ATGGCAAGGAAGCGAAAACAGCCACCTCAACCCGCTCGATCCGAAGAACCCCCACTCAAGCAGCAACAACAATCCCAATTCGACGCAGAAGCAGAATACGAAGAAGTCGAAGAGGAACACAAAGAAGAGGAAGAAGAAAGCGAAGAAGAAGAAGAAGACGACGAAGAAGAAGAAGCCAACGACGAAACACCGAAATTGCCCTCCACGTCATCATCATCCCCGGACGGTGTCGACGACGAGCCCATCCAGAACCTTCTAGAACCCCTCGGCAAGGACGAGATCGCGAGACTCCTCTGCGAGGCCGCCTCCAAGCACCGTGACGTGGCAGATCGAATCCGCCGGGCCGCCGACGTCGACCCCTCGCACCGCAAAATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGAAACCCTCACCGCCGCGTTCCGTCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCGCCGACAAGGCCACAGGGAAATCCAAGGGCTACGGCTTCATTCTCTTCAAGACCCGCCGCGGCGCCCGCAATGCTCTTCGTGAACCGCAGAAAAGGATCGGCAACCGCACCGCCGCGTGCCAGCTGGCGTCGGTTGGCCCGGTCCAGCCGCAGGCCGCCGCGATCCCGGCGTCCACGACGCCGGGGGCTTCGGAATTCACGCAGAAGATCTACGTGAGCAACGTGGGCGCGGAATTGGACCCGCAGAGGCTTCTCGCGTTCTTTTCGCGGTTTGGAGAAATTGAGGAAGGGCCTTTGGGGCTTGACAAGGTCACTGGGAAACCGAAGGGGTTTTGTTTATTTGTTTATAAGAGCGTGGAGGGTGCGAAGAGGGCGTTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCATTGCCAGAGGGCAATTGATGGTCCCAAGCAACAGCGAATGATGGCCGTGCCAGGTAGTTCTCAGAGTGGTGGGTTTGTTGGTGGTGTGGCAGCAGTGCCGGCGCCGGGGCATTTGATGGCTCCGGCTGGGCCTGCAACGGCGGTGCAGCCTGTGAATCCAGCGATTGGGCAGGCGCTGACGGCTCTGCTTGCATCTCGGGGGGCTGGGTTGCAGTTGAATGGGTTGTTGGGGATAGGGTCACCTGCAGCAGTGGCTGTGAACCCTGGTGGTTATGGTGGACAGGGGAGTGTGAATCCAGGGGGTGTTGGTGTTAGTGTTGGTGGGTATGGGAATCAAGTAGGGTTGCAGGGTGCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAGGGCAGCAGCAGCAGCAGTATGGTGTTGGACAGTATGGTGGTGTTGCTCCTTACATGGATACAGTTCCACCATCCCATTGGACTCAAGAAGTAGAGGGATTCCACTTAAGTGCATCAATCTTTTATTACTGGCCTGGCAAGATGCCTTATTCCTTCTCAGGATTGATAGTACACTATAGTAACATGCTCCTTATTCCTACCAATACCCCCCCTCCCCCCACCCACAAAGATTCACCTTGTCCTCATGGTGAAAATGAGGAAAGGCATGCCGTAGAGTAG 1557 0.571 MARKRKQPPQPARSEEPPLKQQQQSQFDAEAEYEEVEEEHKEEEEESEEEEEDDEEEEANDETPKLPSTSSSSPDGVDDEPIQNLLEPLGKDEIARLLCEAASKHRDVADRIRRAADVDPSHRKIFVHGLGWDATAETLTAAFRQYGEIEDCKAVADKATGKSKGYGFILFKTRRGARNALREPQKRIGNRTAACQLASVGPVQPQAAAIPASTTPGASEFTQKIYVSNVGAELDPQRLLAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEVPHKKFEGHILHCQRAIDGPKQQRMMAVPGSSQSGGFVGGVAAVPAPGHLMAPAGPATAVQPVNPAIGQALTALLASRGAGLQLNGLLGIGSPAAVAVNPGGYGGQGSVNPGGVGVSVGGYGNQVGLQGAYASQQQVGIGGSGRGQQQQQYGVGQYGGVAPYMDTVPPSHWTQEVEGFHLSASIFYYWPGKMPYSFSGLIVHYSNMLLIPTNTPPPPTHKDSPCPHGENEERHAVE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4013g00003 518 MobiDBLite consensus disorder prediction 495 518 - -
Mupr4013g00003 518 MobiDBLite consensus disorder prediction 30 61 - -
Mupr4013g00003 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Mupr4013g00003 518 MobiDBLite consensus disorder prediction 1 83 - -
Mupr4013g00003 518 SUPERFAMILY RNA-binding domain, RBD 116 204 IPR035979 GO:0003676
Mupr4013g00003 518 Gene3D - 18 205 IPR012677 -
Mupr4013g00003 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 34 300 - -
Mupr4013g00003 518 Gene3D - 206 310 IPR012677 -
Mupr4013g00003 518 SMART rrm1_1 224 296 IPR000504 GO:0003723
Mupr4013g00003 518 SMART rrm1_1 124 196 IPR000504 GO:0003723
Mupr4013g00003 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 192 IPR000504 GO:0003723
Mupr4013g00003 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Mupr4013g00003 518 SUPERFAMILY RNA-binding domain, RBD 207 322 IPR035979 GO:0003676
Mupr4013g00003 518 Coils Coil 19 62 - -
Mupr4013g00003 518 MobiDBLite consensus disorder prediction 64 78 - -
Mupr4013g00003 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 315 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4013g00003 Mupr-Chr4013 18501 24395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4013g00003 223 302 C2H2 Transcription Factor Family AT2G19380 33.750 1.26e-08 55.5