Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3998g00001 ATGGAAATTCAATTCCAGCATCCAAAGCAGCACTTAAGAGGAGGCAAATTGAAAGTGAGAAACAAGAAAAACAAAAACAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACATAAGATAAGAATGTGGCTTGGCACATATGACAAAGCAGAGGAAGCAGCCAGAGCTTATGATGAAGCTGCATGCCTCCTTCGCGGTTCCAACACTCGCACCAACTTCATCACATGTGTGTCCTTCGATTCCCCTCTTGCTTCACGGATTCAGAATCTTCTCAACAACAGAAATGGTGTCAAAACCACACAACAAGAACAAGATGTGCAAACATGTGCCACAAGGGTCAACACCAATCGACAAAAGTTAAGTCTTACTGAAGAAGATAGTCCCTCAAAATATGACCAACTAAAGTTTAAATCTTTGTTGCAAGAAGTGTCCACAATTAATGTTCGATCTTACCTCGAACAAGATTGTCTTCGAAAAAATATACCTATGGGAAACAAAAAAAATAGAAGGGTCAACGATACCCCTAGTAATACTAGTAGTAGTAATTTTAGTGATACATGTGAGAACTCACTTTGTAGTGAGAACTCACTTTGTAGTGAGACCACAACCCAAAACACACAGCTATTGGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGGGTATGAGTCAGGTTTTCAGAACAATCCTTCATGGGGTTTTGAAGCTGTTTTTGATCGTTTGCCCTTTAGCCAAGTAATGGATGTGGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAGAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTTCAAGACTCCAATAATGAAGCTCTCTGGGATCTTGCACCCCTAAAGTAG 948 0.4072 MEIQFQHPKQHLRGGKLKVRNKKNKNKYVGVRQRASGKWVAEIKDTTHKIRMWLGTYDKAEEAARAYDEAACLLRGSNTRTNFITCVSFDSPLASRIQNLLNNRNGVKTTQQEQDVQTCATRVNTNRQKLSLTEEDSPSKYDQLKFKSLLQEVSTINVRSYLEQDCLRKNIPMGNKKNRRVNDTPSNTSSSNFSDTCENSLCSENSLCSETTTQNTQLLDDAYRPDLSNFMGYESGFQNNPSWGFEAVFDRLPFSQVMDVANLPDIAGLELPEFERMKVERQISASLYAINGVQEYMDTVQDSNNEALWDLAPLK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3998g00001 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 283 - -
Mupr3998g00001 315 MobiDBLite consensus disorder prediction 173 195 - -
Mupr3998g00001 315 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mupr3998g00001 315 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mupr3998g00001 315 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mupr3998g00001 315 MobiDBLite consensus disorder prediction 177 195 - -
Mupr3998g00001 315 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Mupr3998g00001 315 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Mupr3998g00001 315 FunFam ethylene-responsive transcription factor RAP2-11 26 85 - -
Mupr3998g00001 315 CDD AP2 28 83 IPR001471 GO:0003700|GO:0006355
Mupr3998g00001 315 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Mupr3998g00001 315 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3998g00001 Mupr-Chr3998 2710 4097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3998g00001 8 102 AP2-EREBP Transcription Factor Family AT5G19790 68.421 2.27e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mupr3998g00001 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3998g00001 K09286 - gmx:100792432 415.616