Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3985g00003 ATGGGAAGAGTTCCTTGCTGTGACAAGACTGGACTCAAGAAGGGTCCATGGACACCAGAGGAAGACCTTAAACTCACCAACTACGTTCAGATTCATGGACCAGGCAATTGGCGATCCCTCCCTAAAAATGCTGGTCTACAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACTTGAGACCCGATATAAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATACTATTATTCAGTTGCACAGTTTCTTGGGAAACAAATGGTCAGCTATAGCAGCTAAGTTGCCGGGAAGAACCGACAATGAAATAAAGAACTATTGGAACACCCACATTAGGAAGAGGCTGCTTCGAATGGGAATCGACCCAGTTACACACGCCCCACGTCTTGACCTACTTGACATGCCCTCTATTTTAAGGTCAGTGTTGGGTGCCCATGTTTTGATGAATCCGGGTTTGTTAAAGCTGCCTGCCACTGCCACTGCCACTGCCTCTCTTCTACCACGGAATTACTTACAAAACCAAGTTACCCCACCATTAGATTTAACTCAGCTTCATATACCAATGAGTTCAACTCCTTCGAGTGAGAACCTTGTTTTGCAACAAAACCAAGTTGATTTAGTAGGGAATTATTACCCTGATTTGGAGCACTTCCTCAACAATGCAAACCAAAACATGGGGTATGACTCCGTTCTGCCCACGCCTGTGTCAAGCCCACATCGGTTGAATTCATTATCAGCGTACGTGAGAAATGGCGCGGAGGAAGAGACGGAGAGTTATCATGACTTGTTCGAGTTCGAAATTCCTCAGAGTTTGGACATGGCTGACATTTTTTGTAATGTCACACAAACTAATTAA 858 0.4476 MGRVPCCDKTGLKKGPWTPEEDLKLTNYVQIHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDTIIQLHSFLGNKWSAIAAKLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMPSILRSVLGAHVLMNPGLLKLPATATATASLLPRNYLQNQVTPPLDLTQLHIPMSSTPSSENLVLQQNQVDLVGNYYPDLEHFLNNANQNMGYDSVLPTPVSSPHRLNSLSAYVRNGAEEETESYHDLFEFEIPQSLDMADIFCNVTQTN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3985g00003 285 CDD SANT 69 112 IPR001005 -
Mupr3985g00003 285 SMART sant 13 63 IPR001005 -
Mupr3985g00003 285 SMART sant 66 114 IPR001005 -
Mupr3985g00003 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mupr3985g00003 285 CDD SANT 16 61 IPR001005 -
Mupr3985g00003 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
Mupr3985g00003 285 Gene3D - 69 116 - -
Mupr3985g00003 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mupr3985g00003 285 Gene3D - 13 66 - -
Mupr3985g00003 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mupr3985g00003 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mupr3985g00003 285 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mupr3985g00003 285 FunFam Transcription factor MYB39 69 130 - -
Mupr3985g00003 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mupr3985g00003 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mupr3985g00003 285 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3985g00003 Mupr-Chr3985 21449 22891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3985g00003 1 184 MYB Transcription Factor Family AT4G21440 66.019 3.10e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr3985g00003 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3985g00003 K09422 - gmx:100787592 400.208