Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3980g00004 ATGAGGCTGCTCTCTCTCGGAAGTCAGAACGATTCGGAGAAAGCCGGTTGCTTTCTGTGTTCTTTCTCTCTTCTTCTTCGCACGAACTTGCGAGGTTTCTCTGTCCTCACTCAAGGGATGCGGCGGAGCAGTCCAGCATACTACAGTCCTCCACGGCGAGGATACGGCGGCCGAGGCGGAGGGTCCGGCAGGAGGGGATACGGTGGAGGCAGGCGCAGGGAAAACAACAATGGAAGTCTGTTGGTTCGAAACATTCCTCTCGATTGCAGACCCGACGAACTTCGTGCTCCGTTCGAGCGATTTGGACCTGTTCGCGATGTTTACATACCCAAGGACTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTACAGTTTGTGGATCCTTATGAGGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGAGAAATAACTGTAGTTGTGGCTGAAGAGACGAGAAAAAGACCAGAGGAGATGCGCCATAGGACTAGGCCCAGAGGACCAGTAGGCTATGGAGGGCGAAGGTCTTCTTATTACGGGCGTTCTCGATCTCGCTCAATTACCAGATCACGCTCACCACCTTATCCATCTGGTTCTAGAAATCGATATCGCTCAAGGCAATCCACTGAAGCATGTAATCGTGGTTTGAATTTGATATTTACCAGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCCTAGATCACCAAGAGGTCCTCCTGTGGAGCGAGATGCTGATCAAAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTGTTGAACAGAATCAAAGCAATGGATATGCTGATCTGAGGTTGATCGAGGCCAGTGGAAGTCATCCCGAGGTGGAGCATCGAGATCACCCCTCGGATCTAGATCAAGATCAAGATCTCCTGATTTGTCACCCAGACGTGGAAGATGAGGTTGCAGGTCGTTGGCAATGTGCTGCTGGGCTTCTGTACATTTCCTGCAATTTATCACGATATTTACTAAAAATCTGTGTTTTGCTTGAAGTTTGCGAATATGATGGATCATTGATGAATAAATGA 1101 0.4886 MRLLSLGSQNDSEKAGCFLCSFSLLLRTNLRGFSVLTQGMRRSSPAYYSPPRRGYGGRGGGSGRRGYGGGRRRENNNGSLLVRNIPLDCRPDELRAPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYEASEAQYHMNRQIFAGREITVVVAEETRKRPEEMRHRTRPRGPVGYGGRRSSYYGRSRSRSITRSRSPPYPSGSRNRYRSRQSTEACNRGLNLIFTRSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPVERDADQKRRSYSPAYGNGVEQNQSNGYADLRLIEASGSHPEVEHRDHPSDLDQDQDLLICHPDVEDEVAGRWQCAAGLLYISCNLSRYLLKICVLLEVCEYDGSLMNK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3980g00004 366 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 71 212 - -
Mupr3980g00004 366 SMART rrm1_1 79 152 IPR000504 GO:0003723
Mupr3980g00004 366 MobiDBLite consensus disorder prediction 241 267 - -
Mupr3980g00004 366 SUPERFAMILY RNA-binding domain, RBD 75 185 IPR035979 GO:0003676
Mupr3980g00004 366 MobiDBLite consensus disorder prediction 44 75 - -
Mupr3980g00004 366 MobiDBLite consensus disorder prediction 158 281 - -
Mupr3980g00004 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Mupr3980g00004 366 MobiDBLite consensus disorder prediction 184 240 - -
Mupr3980g00004 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 150 IPR000504 GO:0003723
Mupr3980g00004 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 78 273 - -
Mupr3980g00004 366 Gene3D - 71 220 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3980g00004 Mupr-Chr3980 27437 31457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3980g00004 46 140 Eukaryotic Initiation Factors Gene Family AT3G11400 35.789 1.04e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3980g00004 K12900 - gmx:100804294 310.071