Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3963g00001 ATGGATATAAAGACAATAACTATGAAAAGCCTAGCGGTGAATGTCGATAGGGCCAAGCTCTCAGCATGCTTGACATGTCTTTTGTGCAATAAATTGTTCAGAAACTCCACCACAATATCAGAATGCTTGCATACTTGTAAGGAGTGTATAGATAAGAAGTTAATTGATGAGAAATTGACACACTGTCCAGTATGCAATGCAGACTTGGGTTGTTCTCCACTCGATAAATTAAGGTCAGATCGCAGTCTGCAAGATTTGAGGGAGAAGATTTTCCCCAGTGAAGGACAAAATGCTAATGCACCTGCCAGGCTTCCTTCAATCAAATTACGAATCAAAAGAAAGAAGAAATCTCTATCTTCGTTAAAAGCCAATGCAAGAATAGCCGAAGCTGCTTCAAGAAAAGTTTTCACTACAAAAGAATCAGATTTTTCTGCCCCTAAACCTGATAAAGTGGAAGATGAAAACTGCGGTGGGGTAGAAGTTTTGCAAGAAACTTCTGCAATTGCATCTGCAAGAAGAGCAAAAGCTGCAGCAAGAATAAAATTTATTCGAACTGCTACACCTCCAACTTGTCAACTTGACCAAGTAACAGGAGAAGAAAAGAAAGATGATGATCATCCGCGGGTTGAAACCTCCAATGGAACTCTCAAAATTAGAATTCAGAATTCTTCAAAACCAAATTCGAGTCAACAAATAGTGACCAACAAGATTTCAAGGGACAATGCTGAGTTAAGGAATGAAAAGGCTGATGATATGTGCGAGCCATTAAATTCCCTGGTGAAAGGTGCAAGCAAATACAAGTCTCGTAATAAGTCCAGCATGCAAGAAAATGGTGTCACTCCAGTACATGTGCACTCTAATGACAGCGACCCTCAGGTTGAAACCAGCAAACGTTGTCACAGAACAAACGCTGCTGGTGATAAAAATGAGTCAACTCCTTCAGAATCACATTCAGTCAAACGTCAAAGGCTTCTGAGCACCCAAGAAAAAACACCCAAAATCTCGGAGGACTTGAATTTTCCAGCACAACCTGAGATTGGTTCAAACGCTGAAAGCAACAAAGAATTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCTGAAGAGAAGAAAGCAAGTGCACGATTGCCACAAATATCTTCCTGCTACCTAAGGGTCAAGGATGGTAGTGTACCTGTTTCCTACATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGAGATCACATTACGAGGTCAGCCAGTTTTATCTTCACTGCAACTGAAAAACTTAGTAGAGTTGTGGTTGCAAACAGTGCCAACCAATGAGATTCAGACATCTGTTGGAAGCTCAGCTAAGGATTTTATTATGGTCCTTTCATATGGTCGAAAGGCT 1389 0.4089 MDIKTITMKSLAVNVDRAKLSACLTCLLCNKLFRNSTTISECLHTCKECIDKKLIDEKLTHCPVCNADLGCSPLDKLRSDRSLQDLREKIFPSEGQNANAPARLPSIKLRIKRKKKSLSSLKANARIAEAASRKVFTTKESDFSAPKPDKVEDENCGGVEVLQETSAIASARRAKAAARIKFIRTATPPTCQLDQVTGEEKKDDDHPRVETSNGTLKIRIQNSSKPNSSQQIVTNKISRDNAELRNEKADDMCEPLNSLVKGASKYKSRNKSSMQENGVTPVHVHSNDSDPQVETSKRCHRTNAAGDKNESTPSESHSVKRQRLLSTQEKTPKISEDLNFPAQPEIGSNAESNKEFGPIWFCLVAAEEKKASARLPQISSCYLRVKDGSVPVSYIKKYLVKKLGLASETEVEITLRGQPVLSSLQLKNLVELWLQTVPTNEIQTSVGSSAKDFIMVLSYGRKA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3963g00001 463 SUPERFAMILY RING/U-box 22 89 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 192 239 - -
Mupr3963g00001 463 Gene3D - 283 438 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 265 333 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 313 327 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 265 289 - -
Mupr3963g00001 463 Coils Coil 111 131 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 290 305 - -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 196 212 - -
Mupr3963g00001 463 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 12 462 IPR044807 GO:0004842
Mupr3963g00001 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 137 IPR013083 -
Mupr3963g00001 463 MobiDBLite consensus disorder prediction 214 239 - -
Mupr3963g00001 463 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3963g00001 Mupr-Chr3963 7362 10943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3963g00001 11 386 C3H Transcription Factor Family AT2G30580 32.300 4.93e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3963g00001 K16277 - gmx:102669950 388.652