Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr394g00001 ATGCAACCCAAATCTGATACTGTAAATCTACCGAGGTCTGATCCACATTCCTTTACACCTAACAATGTTTATTCTGAACCGTGGTGGCGAGGTATTCAATACAATCCTGTCCCCCAAGCAATGTCAGGGATGAATGCATCCAATTCATCTTCACTTGAACGCCCTAATGGTGATTCAGAATCCAGTGAAGATCAATCTTTGTCCAGTAATGGGTTGAATGAGGAAGATGATGATGCCACCAAAGAACCACAACCCACTGCTCCTAATCAGCCAGGAAATTATGGACAAGACCACCAGGCTATGCAGCATTCTTCATTATCTGCACCTTCTGTGCATGATGATTGCCATACGCAGGCTCCACAGCTGGAACTTGTTGGCCATTCAATTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAATGCCAAACAATACCAAGGAATACTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCACGAGGTAATGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCAGATGAACAAGGAAAAAGATATGGGTACCGGTCCAGTCCCATTGTCACAGTCACTTAGTTTATGTGGTTTTGAACCATTACCCTCTGATTCTGCTGGGACCTGGAATTCTCCTAGTGTGCAACAAGATGCAAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACACAACTATGCAAACGGTAGAGGCCCCTACCATAATCATAACGTTTTGCAGTCATCATCTACTTTTGTTTTGCACTCAGGGGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAACAACGGGGAAGCATCTCATCTGAGCACACCTCACAGAGGCGTCTTGCTATTCAGCGGCAAATCATTCTTGGCTGTGTTTCTAGTGTTCATGATATGGGGAGAAGAATGATTGATTGGGCCATGATACTAGTGTTGTTGAAGTCAACCAATCCTTCATTATATTCTCTTTCTTTTTTCTTTTCATTTTGCACAAAGGTAGTAGTTAGGGAGGTCAAGGATCAGAAGTCTTGA 1158 0.4344 MQPKSDTVNLPRSDPHSFTPNNVYSEPWWRGIQYNPVPQAMSGMNASNSSSLERPNGDSESSEDQSLSSNGLNEEDDDATKEPQPTAPNQPGNYGQDHQAMQHSSLSAPSVHDDCHTQAPQLELVGHSIGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNQMNKEKDMGTGPVPLSQSLSLCGFEPLPSDSAGTWNSPSVQQDARGSQVHERFEEHNYANGRGPYHNHNVLQSSSTFVLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQRQIILGCVSSVHDMGRRMIDWAMILVLLKSTNPSLYSLSFFFSFCTKVVVREVKDQKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr394g00001 385 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Mupr394g00001 385 MobiDBLite consensus disorder prediction 83 114 - -
Mupr394g00001 385 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Mupr394g00001 385 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Mupr394g00001 385 MobiDBLite consensus disorder prediction 1 114 - -
Mupr394g00001 385 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Mupr394g00001 385 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Mupr394g00001 385 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Mupr394g00001 385 MobiDBLite consensus disorder prediction 1 28 - -
Mupr394g00001 385 MobiDBLite consensus disorder prediction 38 73 - -
Mupr394g00001 385 Gene3D - 149 211 - -
Mupr394g00001 385 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 284 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr394g00001 Mupr-Chr394 3235 5573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr394g00001 23 253 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.512 5.18e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr394g00001 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr394g00001 K08064 - gmx:102664020 534.643