Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3908g00004 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTTGTCGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTCGACCAGTTCGGCGACATTCTTGAAGCCGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGCTTCGTAACATTCCGTGATCCTGAATCAGCTAGAAGGGCATGTGCCGATCCAAACCCAGTCATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGGCCTAGACCATCACCACCTAGAGGAAGGGGCACATTCCAAGGAGGAACGGGAACGGCGTCGTACAGTGGCGTTCCGGCGGCAGGGGCGGCGGCAATGGCACCGCCGCCACCGCCGGTGGTGTACCCGCCGTATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAGTACTACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCATATTACTATGGCTACTCTCTGCAAGCACCAAGAGGCACATTTTCTACACCCCAACCACATCGCTTACCAGCTGGACCCTCCTATCTATACTACCCTACACCCATGGAAGCCTCATTCTCTGCCTATCGTCCACCACCTCAATTGCAACCACTACCAATAAGGCAACCCCCTCCTTCTCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 813 0.5117 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFDQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGTGTASYSGVPAAGAAAMAPPPPPVVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSLQAPRGTFSTPQPHRLPAGPSYLYYPTPMEASFSAYRPPPQLQPLPIRQPPPSPSDSQTQQRTSSEAAGGVVITSESSNTQGRN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3908g00004 270 SMART rrm1_1 17 89 IPR000504 GO:0003723
Mupr3908g00004 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Mupr3908g00004 270 MobiDBLite consensus disorder prediction 240 270 - -
Mupr3908g00004 270 MobiDBLite consensus disorder prediction 221 270 - -
Mupr3908g00004 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Mupr3908g00004 270 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Mupr3908g00004 270 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Mupr3908g00004 270 Gene3D - 3 113 IPR012677 -
Mupr3908g00004 270 PANTHER BOULE-RELATED 6 247 - -
Mupr3908g00004 270 MobiDBLite consensus disorder prediction 91 114 - -
Mupr3908g00004 270 MobiDBLite consensus disorder prediction 225 239 - -
Mupr3908g00004 270 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3908g00004 Mupr-Chr3908 53296 57620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3908g00004 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.48e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3908g00004 K25006 - gmx:100787086 379.793