Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3908g00003 ATGAATCAAAACCAGCTTCAGCCCCTGCCTCTGCTTAGTAGCTTTCTGGGTTCGGCTCCAAAGGAAGCTACTTTGCTCCAAAACCAAAATCCTAAAGCATGTGAAGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACAATTCAAGTGGCTCCACCAATAATCATGGATTTGTGAATACCACAACTCATGTTCCTAACAATTACTGGATACCAACTCAGGAGCAGATTCTCATTGGCTTCAGCCATTTCTCTTGTCCTGTATGCCTCAAAACCTTCAACCGCTACAACAACCTTCAGATGCATATGTGGGGACACGGGTCACAGTATAGAAGGGGACCAGAGTCGCTGAAAAGAAGCCATCCACGACCATTGTTGGACATTCCATGCTACTGTTGTTGTGGAGGGTGCAAGAACAACATCGAGCACCCAAGAGCGAAGGCACTGAAGGATTTCCGCACGCTTCAGACACACTACAAGAGGAAGCACGGGGCCAAACCCTTCACGTGTCGCAAGTGTGGGAAGCCTTTGGCCGTCAAGGGTGACTGGCGAACCCATGAGAAAAACTGTGGCAAACGCTGGCTCTGTCTTTGTGGCTCCGACTTCAAACATAAAAGGTCCCTTAAAGACCACATCAAGGCCTTTGGATTTGGCCATACCCCTTTTTCTTCTTCTTCTTCTTCATCTCAACCCAATCCCTCTAATTTT 708 0.4788 MNQNQLQPLPLLSSFLGSAPKEATLLQNQNPKACEDVTVALHIGLPDNSSGSTNNHGFVNTTTHVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRSHPRPLLDIPCYCCCGGCKNNIEHPRAKALKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHTPFSSSSSSSQPNPSNF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3908g00003 236 Pfam Zinc finger, C2H2 type 84 103 IPR013087 -
Mupr3908g00003 236 SUPERFAMILY beta-beta-alpha zinc fingers 79 106 IPR036236 -
Mupr3908g00003 236 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Mupr3908g00003 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Mupr3908g00003 236 FunFam Zinc finger protein WIP2 137 219 - -
Mupr3908g00003 236 FunFam zinc finger protein WIP2-like 83 106 - -
Mupr3908g00003 236 Gene3D Classic Zinc Finger 164 221 - -
Mupr3908g00003 236 PANTHER ZINC FINGER PROTEIN WIP2 9 226 IPR043584 GO:0003700|GO:0010468
Mupr3908g00003 236 SUPERFAMILY beta-beta-alpha zinc fingers 153 188 IPR036236 -
Mupr3908g00003 236 Gene3D Classic Zinc Finger 83 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3908g00003 Mupr-Chr3908 47193 48266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3908g00003 37 235 C2H2 Transcription Factor Family AT1G34790 64.019 1.90e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr3908g00003 zf-C2H2 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3908g00003 - - ccaj:109809318 435.261