Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3899g00002 ATGAAGCATGCGGTGCCAGCTAAGCTCGATGTCGTGACTTTCATTTCTTCCTTCTTTGCTCTCACTCGCCGATGCCCTTTGCATCGCTCTAAGCAACGCATCCTTTTCGATCCATATTTGAGCGTGAATATAAGTCATCATGCTGTTGTGACAGTTAAAGACAGTGAAGTATGGGGAAGGAGCCTTGGAGTAAACAAGAGGATGTCGAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGCCGGCGAGATATGGTTTGTCCTAGCTGTAATGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTGTTGACATCTTTGGAATGGACAACAGTGATGAACGAGATCAAAGGCTTGGACTCATGGAAAGTTTGTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCCGAAACCGTGACATCAGGGCCCGAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATTCCTTTCAGATTATCTGGACATGGTGGCTTTGAAGCTCTATTTAATGGGGCTCCAGGAATTGGTTTGACACGAGGTAACACAGGCGATTATTTTGTCGGTCCTGGATTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGACAAGGTCCCCCACCGGCATCGAGGTCCTCCATCGATGCAATGCCTACCATCAAGATCACACAGAGGCATCTTCGTTCAGATTCGCATTGTGCAGTGTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCAGATTGTATCGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGCCAAGAACTGCCACCACAAGGATTGAGTAGTAACCGCAGTGGCACAAATGGTAGAAGTAGAAGTGGAAGGGTAAGCAGTAGTGGCAGGGAGAGCCAGGGAAGGAGAAATCCGTTTTCTTTTTTGTGGCCTTTCCGTTCTTCTCATTCTAGCAGTAATGGTGGTGAAGCAACCGGAAGCAGCACAACAACACCAACTATTCCTGAGAATAGCAATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 1128 0.4654 MKHAVPAKLDVVTFISSFFALTRRCPLHRSKQRILFDPYLSVNISHHAVVTVKDSEVWGRSLGVNKRMSNSRNTHWCYSCRRPVRLGRRDMVCPSCNEGFVHELNDMVHVNPVDIFGMDNSDERDQRLGLMESLSAFMRHQMADRGRNRDIRARTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFVGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCAVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRSGTNGRSRSGRVSSSGRESQGRRNPFSFLWPFRSSHSSSNGGEATGSSTTTPTIPENSNHAGYSGWPFE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3899g00002 375 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Mupr3899g00002 375 SMART ring_2 253 293 IPR001841 -
Mupr3899g00002 375 MobiDBLite consensus disorder prediction 297 375 - -
Mupr3899g00002 375 FunFam E3 ubiquitin-protein ligase RING1-like 216 300 - -
Mupr3899g00002 375 Pfam zinc-ribbon 73 104 IPR039525 GO:0061630
Mupr3899g00002 375 CDD RING-H2_RNF126-like 253 294 - -
Mupr3899g00002 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 298 - -
Mupr3899g00002 375 MobiDBLite consensus disorder prediction 336 366 - -
Mupr3899g00002 375 MobiDBLite consensus disorder prediction 298 328 - -
Mupr3899g00002 375 Pfam Ring finger domain 252 294 IPR001841 -
Mupr3899g00002 375 SUPERFAMILY RING/U-box 233 300 - -
Mupr3899g00002 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 300 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3899g00002 Mupr-Chr3899 6328 8513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3899g00002 188 298 C3H Transcription Factor Family AT5G01980 46.087 1.07e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3899g00002 K11982 - gmx:100787523 561.222