LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr3888g00014	ATGTTAAAAACGATCATAGATGAACATGGCAGCAAGCAGCACATTTTGGAGGAGCTGAAGGCCATAAGTAATTTGATTTCCATAGTTGAGATAAAGCAGAGTCCTGAATGTCCTTGCCTGACTGACCCTCCTCCACTAGCCTGTCTCTCTTCACAAATCACAACCTTACCGATCTGCCATTTCTCACTCTTGTATCAACAAGGTTTGGTGCACTTAGATCTAAAAGCCATAGAGATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTGTACCCCGTTGATCAGCTATCTGCTGATGGCACTGCTTACCATAAAGCTTGCTTCAAGTGCTCTCATTGCAAAGGAACCTTAAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTTTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCTGTCACCTGCAAAGCAAGCTGACCAAACAAATCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGTAGCGGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGTGGCTGTCCCATTACGCCATCCAATTATGCTGCCCTTGAGGGTGTTTTGTATTGCAAGCACCACTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAGTCTGCATCAATCAAACGGGCAGCAAACTCTGTTCCACAAACTTGA	804	0.4428	MLKTIIDEHGSKQHILEELKAISNLISIVEIKQSPECPCLTDPPPLACLSSQITTLPICHFSLLYQQGLVHLDLKAIEMSFIGTQQKCKACDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFLSPAKQADQTNPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVAVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASIKRAANSVPQT	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr3888g00014	267	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	178	211	-	-
	Mupr3888g00014	267	FunFam	LIM domain and actin-binding 1	180	250	-	-
	Mupr3888g00014	267	Gene3D	Cysteine Rich Protein	180	250	-	-
	Mupr3888g00014	267	Gene3D	Cysteine Rich Protein	82	152	-	-
	Mupr3888g00014	267	CDD	LIM1_SF3	84	146	-	-
	Mupr3888g00014	267	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	212	251	-	-
	Mupr3888g00014	267	ProSitePatterns	LIM zinc-binding domain signature.	88	122	IPR001781	-
	Mupr3888g00014	267	ProSiteProfiles	LIM domain profile.	86	146	IPR001781	-
	Mupr3888g00014	267	CDD	LIM2_SF3	186	246	-	-
	Mupr3888g00014	267	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	114	154	-	-
	Mupr3888g00014	267	FunFam	LIM domain and actin-binding 1	82	152	-	-
	Mupr3888g00014	267	ProSiteProfiles	LIM domain profile.	184	244	IPR001781	-
	Mupr3888g00014	267	PANTHER	OS06G0237300 PROTEIN	61	187	-	-
	Mupr3888g00014	267	Pfam	LIM domain	186	241	IPR001781	-
	Mupr3888g00014	267	Pfam	LIM domain	88	143	IPR001781	-
	Mupr3888g00014	267	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	80	113	-	-
	Mupr3888g00014	267	SMART	lim_4	87	139	IPR001781	-
	Mupr3888g00014	267	SMART	lim_4	185	237	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr3888g00014	Mupr-Chr3888	61643	64859	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Mupr3888g00014		LIM	4.4e-11	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr3888g00014	K09377		-	gmx:100807765	380.948