Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3862g00002 ATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGAACAGACAAGACATATCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAGTTTCCGTCTTTTGTATGACACAAAGGGTCGTTTCCGTCTCCACTCTGTAAGGGATGAAGAATCAAAGTTTAAGCTCTGTAAGGTTCGATCTGTTCAATTTGGACAAAAGGGCATCCCCTATTTGAACACATTTGATGGACGCACAATCCGCTATCCCGACCCACTAATCAAGGCTAATGATACCATCAAACTTGACCTGGAAAGCAACAAGATCACAGATTTCATCAAATTTGACGTGGGGAATATTGTTATGGTCACTGGTGGAAGGAACAGAGGCCGTGTCGGTATCATCAAGAGCAGAGAGAAGCACAAGGGAAGTTTCGATACCATCCACGTCCAGGATGCAACCGGTCACGAGTTTGCAACTCGTATGGGTAATGTTTTCATTATTGGCAAAGGGACAAAGTCTTGGGTGTCTCTTCCCAAGGGCCGGGGTATCAAGTTGTCTATCATTGAGGAGGCTAGAAAGAGGATTGCTGCACAATATGAAACTGCTGCCTAA 600 0.4433 MQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNIVMVTGGRNRGRVGIIKSREKHKGSFDTIHVQDATGHEFATRMGNVFIIGKGTKSWVSLPKGRGIKLSIIEEARKRIAAQYETAA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3862g00002 199 SMART kow_9 109 136 IPR005824 -
Mupr3862g00002 199 FunFam 40S ribosomal protein S4 110 180 - -
Mupr3862g00002 199 Pfam Ribosomal family S4e 30 104 IPR013845 -
Mupr3862g00002 199 ProSiteProfiles S4 RNA-binding domain profile. 1 36 - -
Mupr3862g00002 199 CDD S4 1 47 - -
Mupr3862g00002 199 Gene3D - 110 180 IPR014722 -
Mupr3862g00002 199 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 189 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mupr3862g00002 199 Gene3D - 1 52 IPR036986 GO:0003723
Mupr3862g00002 199 CDD KOW_RPS4 110 164 IPR041982 -
Mupr3862g00002 199 FunFam 40S ribosomal protein S4 57 107 - -
Mupr3862g00002 199 Pfam KOW motif 112 145 IPR005824 -
Mupr3862g00002 199 Pfam 40S ribosomal protein S4 C-terminus 147 193 IPR032277 -
Mupr3862g00002 199 Gene3D - 57 107 IPR038237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3862g00002 Mupr-Chr3862 4548 5748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3862g00002 1 194 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 86.598 5.57e-131 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3862g00002 K02987 - gmx:100801792 385.956