Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3853g00001 ATGGCGTACCACAACCATAACCTCGGACAACAAGACCTCCCACTCCACCATTTCCCGAACCAATCCATATTACCGGACCAGCAACAACTGCCCTCCTCGCCCGACCCTACCTCCAAACCTCCTTCCGATCCACACCCTCTCCAAACCGCACCCAATTGGCTCAACGACGCCCTCCTCCGCACTCACTACACCGACACCAACAACGACAACGACACCACCGCCACTAACAACAACGTTAACTCCAACAACAGCGCCTCCAATTTCCTGAACCTCAATCCTGGCTCCGACGCGCGGTGGCTGGCGCGGCCGATCCTCCACCGCCACCCCGGCGAAGTCATCGACGCCGGCGGCGAGTCCCTAGTGGAAGGCGGCGAGTTGAAGGAGGGCGACGCCGTTAACTGGCAGGTTGGACGGTGGAAGGCGGAGATTCTGGCGCACCCACTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGCCTCCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCGCAGTTGGCGCAGTCGCAGAATGTGGTCGCCAAGTACACCGCCTCCTTCGGGCACAACCTCGTGGACGACAAAGAACTTGACCACTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAGCAATTGCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTGCAGAGTCTAACAGGAGTTTCACCTGGGGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGAGCAAGCAGATAGTGATGCCAATCTCTTTGATAGTAGTTTGGATGGAGCAGATAGCATGGGATTTGGCCCTCTTGTTCCTACAGAGAGTGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAACTAAAGCATGAGCTGAAACATGATTATAAGGAGAAAATTGTAGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTACTTAAATCTTGGTGGCAATCACATTCCAAATGGCCTTACCCTACCGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAACGCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTATTCCTATCAAAACTAG 1215 0.5243 MAYHNHNLGQQDLPLHHFPNQSILPDQQQLPSSPDPTSKPPSDPHPLQTAPNWLNDALLRTHYTDTNNDNDTTATNNNVNSNNSASNFLNLNPGSDARWLARPILHRHPGEVIDAGGESLVEGGELKEGDAVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYTASFGHNLVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQADSDANLFDSSLDGADSMGFGPLVPTESERSLMERVRQELKHELKHDYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASTSTVLKSKRKRYSYQN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3853g00001 404 ProSiteProfiles ELK domain profile. 302 322 IPR005539 GO:0003677
Mupr3853g00001 404 SMART HOX_1 324 389 IPR001356 GO:0003677
Mupr3853g00001 404 Pfam KNOX2 domain 195 244 IPR005541 GO:0003677|GO:0005634
Mupr3853g00001 404 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
Mupr3853g00001 404 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 165 385 - -
Mupr3853g00001 404 MobiDBLite consensus disorder prediction 14 33 - -
Mupr3853g00001 404 MobiDBLite consensus disorder prediction 63 85 - -
Mupr3853g00001 404 MobiDBLite consensus disorder prediction 1 51 - -
Mupr3853g00001 404 Gene3D - 321 395 - -
Mupr3853g00001 404 Pfam KNOX1 domain 140 180 IPR005540 GO:0003677|GO:0005634
Mupr3853g00001 404 SUPERFAMILY Homeodomain-like 324 387 IPR009057 -
Mupr3853g00001 404 MobiDBLite consensus disorder prediction 244 265 - -
Mupr3853g00001 404 SMART KNOX2_2 190 245 IPR005541 GO:0003677|GO:0005634
Mupr3853g00001 404 FunFam homeobox protein knotted-1-like 3 isoform X1 323 384 - -
Mupr3853g00001 404 CDD homeodomain 325 386 IPR001356 GO:0003677
Mupr3853g00001 404 SMART KNOX1_2 137 181 IPR005540 GO:0003677|GO:0005634
Mupr3853g00001 404 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3853g00001 Mupr-Chr3853 7064 10029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3853g00001 1 399 Homeobox Transcription Factor Family AT5G25220 65.888 7.22e-176 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr3853g00001 KNOX2 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3853g00001 - - gmx:100784317 640.188