Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3835g00001 ATGCAGTACCCGGCCGCGATGGTAATGCAGCACCATATGTTGCCGCCTCAGCATTACGCGCCGCCGCCATACGTGCCCTTCCACCACCAGTACCCGCCGCACGTGCCACACCAACACCAGCAACACCCCAATGGATCCGCCGGCGATAACAAAACCATCTGGATCGGCGATTTGCATCATTGGATGGACGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCTTCCATAAAGGTTATTCGCAATAAGCAAACCGGTCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACACACTACAGCTGAGAAAGTTTTGCAGAATTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGTCTGAACTGGGCAACATTCAGCACGGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGACAATGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCACCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTTCAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAACGATTGGCAAGCAAACGGTCCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAGTCCCTGGACTGGGGCATATTATGGGGGGCCTATATATGATGGTTATGGATACGCGTTGCCACCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCACTTTATGGAGGTCACCAACAACAAGTAAGCTGA 1140 0.4693 MQYPAAMVMQHHMLPPQHYAPPPYVPFHHQYPPHVPHQHQQHPNGSAGDNKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHTTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSTRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGGPIYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3835g00001 379 FunFam Polyadenylate-binding protein RBP47C isoform A 143 219 - -
Mupr3835g00001 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 321 IPR000504 GO:0003723
Mupr3835g00001 379 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 41 325 - -
Mupr3835g00001 379 CDD RRM2_SECp43_like 143 222 - -
Mupr3835g00001 379 CDD RRM1_SECp43_like 52 132 - -
Mupr3835g00001 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 223 IPR000504 GO:0003723
Mupr3835g00001 379 Gene3D - 50 130 IPR012677 -
Mupr3835g00001 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 314 IPR000504 GO:0003723
Mupr3835g00001 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
Mupr3835g00001 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 210 IPR000504 GO:0003723
Mupr3835g00001 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 131 IPR000504 GO:0003723
Mupr3835g00001 379 SMART rrm1_1 52 127 IPR000504 GO:0003723
Mupr3835g00001 379 SMART rrm1_1 250 317 IPR000504 GO:0003723
Mupr3835g00001 379 SMART rrm1_1 145 219 IPR000504 GO:0003723
Mupr3835g00001 379 SUPERFAMILY RNA-binding domain, RBD 128 238 IPR035979 GO:0003676
Mupr3835g00001 379 SUPERFAMILY RNA-binding domain, RBD 237 349 IPR035979 GO:0003676
Mupr3835g00001 379 FunFam Polyadenylate-binding protein RBP47 234 351 - -
Mupr3835g00001 379 SUPERFAMILY RNA-binding domain, RBD 12 132 IPR035979 GO:0003676
Mupr3835g00001 379 MobiDBLite consensus disorder prediction 224 255 - -
Mupr3835g00001 379 Gene3D - 238 350 IPR012677 -
Mupr3835g00001 379 Gene3D - 132 237 IPR012677 -
Mupr3835g00001 379 CDD RRM3_NGR1_NAM8_like 248 319 - -
Mupr3835g00001 379 FunFam Polyadenylate-binding protein RBP47C isoform A 50 130 - -
Mupr3835g00001 379 MobiDBLite consensus disorder prediction 219 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3835g00001 Mupr-Chr3835 6471 10988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3835g00001 24 329 Eukaryotic Initiation Factors Gene Family AT4G34110 27.653 1.41e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3835g00001 - - gmx:100801446 681.404