Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr382g00003 CGAAACGACGCAGAGGATCCAGTGAGCAGAACAGCAGCGGAGAAGGGAAAACGGCACCGCCGTAGAAGAGAAGAGCGATGGTCCACGTGTCATTTTACCGGAACTACGTTCAAGAAGCCCCGGCGTCCGTACGAGAAGGAGCGTCTGGACGCGGAGCTGAAGCTGGTAGGTGAGTACGGGCTCCGGTGCAAGCGGGAGCTGTGGAGGGTGCAGTACGCCCTCAGCCGCATCCGCAACAACGCGCGGAACCTGCTCACCCTCGACGAGAAGAACCCTCGCAGGATCTTCGAGGGCGAGGCGCTTCTCCGCCGGATGTTCCGCTACGGCCTCCTCGACGAGACCCAGAACAAGCTCGACTATGTCCTCGCTCTCACCGTCGAGAACTTCCTCGAGCGCCGCCTCCAGACCCTCGTCTTCAAATCTGGGATGGCCAAGTCCATTCATCACGCTAGGGTTCTCATTAGGCAGAGGCACATCAGGGTGGGTAGGCAAGTTGTAAACATTGCATCTTTCATGGTGAGGGTTGACTCGCAGAAACATATTGATTTCTCACTCACAAGTCCCCTTGGTGGTGGACGCCCTGGAAGAGTGAAGAGAAAGAACCAAAAGGCAGCTGCTAAGAAGGCTGCTGGTGGTGATGGAGACGAGGAAGATGAGGATTAG 663 0.5716 RNDAEDPVSRTAAEKGKRHRRRREERWSTCHFTGTTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIASFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr382g00003 220 ProSitePatterns Ribosomal protein S4 signature. 130 154 IPR018079 GO:0019843
Mupr382g00003 220 PANTHER 30S 40S RIBOSOMAL PROTEIN 34 208 IPR022801 GO:0003735|GO:0015935|GO:0019843
Mupr382g00003 220 ProSiteProfiles S4 RNA-binding domain profile. 132 203 - -
Mupr382g00003 220 CDD S4 132 176 - -
Mupr382g00003 220 Pfam Ribosomal protein S4/S9 N-terminal domain 33 131 IPR001912 GO:0019843
Mupr382g00003 220 SMART Ribosomal_S4_2 15 131 IPR001912 GO:0019843
Mupr382g00003 220 Pfam S4 domain 132 175 IPR002942 GO:0003723
Mupr382g00003 220 MobiDBLite consensus disorder prediction 186 220 - -
Mupr382g00003 220 FunFam 40S ribosomal protein S9 131 211 - -
Mupr382g00003 220 SMART s4_6 132 203 IPR002942 GO:0003723
Mupr382g00003 220 SUPERFAMILY Alpha-L RNA-binding motif 36 182 - -
Mupr382g00003 220 Gene3D - 131 189 IPR036986 GO:0003723
Mupr382g00003 220 MobiDBLite consensus disorder prediction 1 25 - -
Mupr382g00003 220 NCBIfam 30S ribosomal protein S4 37 189 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr382g00003 Mupr-Chr382 6030 7587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr382g00003 34 210 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.960 1.72e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr382g00003 K02997 - gmx:100807649 332.798