Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3820g00009 AAAAAGAGAGAAAAATATATACACTATTCTGCTAAGGGCTGGAACCTGCTCTCCTGTCCTGCATATAACTTCTCCACTTTGTTTCCTCACCAGGGTGAAGAGGCTGTTCCAAACTTCCATTTGTTCTTTCTTTTTGAGATTCTTCCTAACCTGACAAAAACAGCTCAAAGAACAAAATTTACCTATGAAAATAGAATGATGATCTTTTCCTTGATTCAGCTTGCAAGCATGGCTTTTCCAAACCAATCGACGTCATCAGTTTCTCCCCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGTCAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATAGTCTTTTCAAGCCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTGAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGACTCATCTAGTGGTGGATCTACTTCTGAGGCTAATGCTCAGAAGCTGCCAAACTACGAGCAAATGATGGGTGAGGCTCTGAGCACTATGAATGCCAAGGATCTCAAAAACCTTGAGACTAAACTAGAGAAAGGAATTAGCAGAATTCGTTCCAAGAAGGAGATAGACTTGCACAATAGCAACCAGCTTCTTAGAGCAAAGATAGCAGAAAATGATAGGAGTGAGCATAATATTAACGTGTTGTCCGGAAGCACAAGCTACGAATCGATGCAATCTCAGTTTGAGTCTCGTGGCTTCTTCCAAGTGACTGGATTACAACCCAATAATAATCAGTATGCCGGCCAAGACCACATGTCCCTTCAATTT 864 0.4225 KKREKYIHYSAKGWNLLSCPAYNFSTLFPHQGEEAVPNFHLFFLFEILPNLTKTAQRTKFTYENRMMIFSLIQLASMAFPNQSTSSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSDSSSGGSTSEANAQKLPNYEQMMGEALSTMNAKDLKNLETKLEKGISRIRSKKEIDLHNSNQLLRAKIAENDRSEHNINVLSGSTSYESMQSQFESRGFFQVTGLQPNNNQYAGQDHMSLQF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3820g00009 288 Pfam K-box region 186 244 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr3820g00009 288 SUPERFAMILY SRF-like 94 166 IPR036879 GO:0003677|GO:0046983
Mupr3820g00009 288 CDD MADS_MEF2_like 94 163 IPR033896 GO:0000977|GO:0045944
Mupr3820g00009 288 PANTHER SERUM RESPONSE FACTOR HOMOLOG 93 245 - -
Mupr3820g00009 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 102 149 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 ProSiteProfiles MADS-box domain profile. 93 153 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 FunFam MADS-box transcription factor 21 105 171 - -
Mupr3820g00009 288 Gene3D - 105 182 IPR036879 GO:0003677|GO:0046983
Mupr3820g00009 288 MobiDBLite consensus disorder prediction 164 182 - -
Mupr3820g00009 288 MobiDBLite consensus disorder prediction 164 183 - -
Mupr3820g00009 288 PRINTS MADS domain signature 95 115 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 PRINTS MADS domain signature 130 151 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 PRINTS MADS domain signature 115 130 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 ProSitePatterns MADS-box domain signature. 95 149 IPR002100 GO:0003677|GO:0046983
Mupr3820g00009 288 SMART madsneu2 93 152 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3820g00009 Mupr-Chr3820 72266 78463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3820g00009 83 288 MADS-box Gene Family AT3G58780 52.033 1.17e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr3820g00009 K-box 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3820g00009 K09264 - gmx:100800107 329.331