Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3680g00001 ATGGATAAAATATGCAAAGTATGCCGGAGCAGAGAGAAAAGTTTCATTCACTTGTACACTAACATAACATATATATCTTTCCACTGTGGAGTTGTGATTCTTCAATACCATATATTCTTTCTTTCTCTCTCTCTTTCTTTCTTGTTTTGTGTTGTGAAACAGTTAAAAGTTTTGATGAGTGAGGCATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTTGAACCTGAAGGCTACTGAACTGAGGCTTGGATTGCCAGGGTGTGAGTCACCAGAGAGGGAGAGGGATGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAGGTTCTGGGAACTGGAATGGTGGATCTGAAGTGGCTTTGGGGAAAGATGCTGCCTTGTTCTCTCCAAGGGCTGTTAGTGCTGCCCACTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGCCTGCTTCTCTTCTCAAGGAAACTCTTCCACACTCTCCAAAACCATTGCATGACAACAAGCCACACATTTCTGCTCCAGCTCCAGCTGCTAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTGTCAGGCTCAAAAGAATGATGGTGAGTCAGAAGCCAAGTCTGGGTGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCATATTTGAGGAAAGTAGATCTCAATAGTTTTACCACTTACAAGGATCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGGTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTCCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGGTTGTTCTCCCACACTTCAATTACAGTCATTAAGGCTTACCGTATATCTTCTTTGCCCTCTCTCTCTCTCTCTGTAA 1080 0.4426 MDKICKVCRSREKSFIHLYTNITYISFHCGVVILQYHIFFLSLSLSFLFCVVKQLKVLMSEALEEVPSMKGGLNLKATELRLGLPGCESPERERDGVFKSVVVSGAKRGFSDAIDGGSGNWNGGSEVALGKDAALFSPRAVSAAHSLTLTATDCTNQPTALPASLLKETLPHSPKPLHDNKPHISAPAPAAKAQVVGWPPIRSFRKNSMACQAQKNDGESEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTISQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLGCSPTLQLQSLRLTVYLLCPLSLSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3680g00001 359 ProSiteProfiles PB1 domain profile. 226 328 IPR000270 GO:0005515
Mupr3680g00001 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 72 333 IPR003311 GO:0005634|GO:0006355
Mupr3680g00001 359 Gene3D - 220 339 - -
Mupr3680g00001 359 FunFam Auxin-responsive protein 221 338 - -
Mupr3680g00001 359 SUPERFAMILY CAD & PB1 domains 221 327 - -
Mupr3680g00001 359 Pfam AUX/IAA family 78 335 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3680g00001 Mupr-Chr3680 2830 5800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3680g00001 229 345 B3 DNA Binding Superfamily AT4G23980 29.915 5.82e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr3680g00001 AUX_IAA 5e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3680g00001 K14484 - gmx:100778529 461.84