Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3660g00001 ATGAGTTTCTCTGACCATATTCCGTCCTTTATGATGTCACCGCCGTCATTTCCCACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACTACGAATCATTGGAGCCACATTCACCAGAGGATCAACCCCCTTTGTTCAAGAAGGCAAGGACCTCTGATAACATCCACTCCAATGCCATGCCATGCCCTCCAAGGATGATTCAGCACCCCGCAATTAACAAAGGAACGAGCCACATATTTTTCAAGACCCGCATTTGTGCAAAGTTCAGAGTTGGCGCATGCAGGAACGGCGAGAACTGCAACTTTGCACATGGCATTGAGGACATGAGGCAGCCGCCACCAAATTGGCAAGAACTTGTAGGGTTGCGCAATGAGGAGCGGCCACCCTCGGGGAATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTATAATGGGGAGGAATGCCCATATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCGGGGAGGTTCAGGGAGAGCACAGCCATAAGCATTGGAACTATTGGATCCCCCAAGTCCTTTGGTGATGCCTCTAATAATGTAGAAAGTAATAGGGCTGTGAACTTTGGCTTAAATGTTTGCCGTGGGAATTTGAAGAATAGTTATTGGAAAACTAAACTTTGTATCAAGTTTGAGACAACAGGTCTCTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACATGGTTCTGGTGGACGCACTGAAGCAGAAACTGGAGCCATTCTAAATTCAATTAAAGCTACCATTCCAACCTTACATAGAGCTACATCAGTTTCTTCTAATGATGCACCTCTTAGCCACAGACCAAGTGTAGCTCCAGCAAATGAAGAGGAGCAAGGTAAGAAGAATTTACTGAAGTGGAAAGGATCCAAGAAGATCAATCGAATTTATGGTGATTGGCTTGACGATTTACCACTTGTTCAAAACATGCCGAGTAGAGTGGGGACCTGA 1038 0.4557 MSFSDHIPSFMMSPPSFPTDTDAIEVRLQFPMNYESLEPHSPEDQPPLFKKARTSDNIHSNAMPCPPRMIQHPAINKGTSHIFFKTRICAKFRVGACRNGENCNFAHGIEDMRQPPPNWQELVGLRNEERPPSGNWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRFRESTAISIGTIGSPKSFGDASNNVESNRAVNFGLNVCRGNLKNSYWKTKLCIKFETTGLCPFGDDCHFAHGQAELHGSGGRTEAETGAILNSIKATIPTLHRATSVSSNDAPLSHRPSVAPANEEEQGKKNLLKWKGSKKINRIYGDWLDDLPLVQNMPSRVGT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3660g00001 345 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Mupr3660g00001 345 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Mupr3660g00001 345 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Mupr3660g00001 345 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Mupr3660g00001 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Mupr3660g00001 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Mupr3660g00001 345 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Mupr3660g00001 345 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Mupr3660g00001 345 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mupr3660g00001 345 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Mupr3660g00001 345 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Mupr3660g00001 345 SUPERFAMILY CCCH zinc finger 224 256 IPR036855 GO:0046872
Mupr3660g00001 345 MobiDBLite consensus disorder prediction 282 312 - -
Mupr3660g00001 345 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Mupr3660g00001 345 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Mupr3660g00001 345 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Mupr3660g00001 345 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 175 IPR045877 GO:0003729
Mupr3660g00001 345 Gene3D - 221 258 - -
Mupr3660g00001 345 Gene3D - 77 114 - -
Mupr3660g00001 345 Gene3D - 140 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3660g00001 Mupr-Chr3660 814 3431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3660g00001 228 256 C3H Transcription Factor Family AT1G68200 62.069 5.43e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr3660g00001 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3660g00001 - - gmx:100793865 605.52