Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr362g00001 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGTGTAACCGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATGCTTCTGTTGCAGAAAGAGTCATTATGGATAAGCACGTAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCCCAATATAAATAGGCCGTCTGGTGGTGCGCATGCATCTCCGGGTCCTGGACGCACGAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACCTTTGATTCTGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTAGTCCCAGCCGGAGCCCATTGATAGGTTTTAACTATGGAGTGAATAGGGCAGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCTATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGTGGGTTTTCTCCTTTTAGCAACACTGGTTATGGAGTGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTTTGGAGGGACTTCCAATTATGGGAGCAATTTAGGATTTGGTAGAATATTTAGTCCTTTCTACAGCGGCGGCAACTCTGGCAGATATACCACTCCTATAGGCTATAGTGGGGGAAATGGGAGAAGCGATTCTCTTATGAACTCAACTTCTCGGAATTTATGGGGAAATGGGGGCCTCAATAACGCCAATAACCCCATCAGCCCAGGTCCTTTCTTAGGATCTGGAAGTGGGGCATTTGGTGTTTCAATTGGAAATAGTGGCACAGGTTGGGGTCCATCCATTCCAGGCCAGGGTGGAGGGGCTGCTTCTAGCTATGGTACTGGGAATAATGTTTATGACGGTGGAGATAGCAGCTTTGGATTAGGTGGTGGAGGGTATGGAAGAAACAGCGGTACTGGTGTGACTCCATCCTCTACATTTAATGTGCCAACTGGTGGTTATGAAGGATCCTATGGGGACTTATACCGCAATGGCAGTGGTTCAGTTTATAATGACTCCACTTGGCGTTCCGCTGCTGCTGAGATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAGTGAATCGCTGCCTAGGAGATATGATAGTTGGATATGTCATGGTAGCAGTAGATCAAGGGAAACTGGTTCCTTTCTTGGAATTGAATTGAGGTGTAAAATCAGATTGCGGGATATACTCAGGAAGATTTGTTCCATGATAGTCTCATGCTTATCAATAGCAACTTTTATGGATTGA 1581 0.4434 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADASVAERVIMDKHVIDGRTVEAKKAVPRDDQPNINRPSGGAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPSPSRSPLIGFNYGVNRAASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFSPFSNTGYGVGVNLDSGLNPSFGGTSNYGSNLGFGRIFSPFYSGGNSGRYTTPIGYSGGNGRSDSLMNSTSRNLWGNGGLNNANNPISPGPFLGSGSGAFGVSIGNSGTGWGPSIPGQGGGAASSYGTGNNVYDGGDSSFGLGGGGYGRNSGTGVTPSSTFNVPTGGYEGSYGDLYRNGSGSVYNDSTWRSAAAEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYSESLPRRYDSWICHGSSRSRETGSFLGIELRCKIRLRDILRKICSMIVSCLSIATFMD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr362g00001 526 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mupr362g00001 526 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Mupr362g00001 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mupr362g00001 526 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mupr362g00001 526 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mupr362g00001 526 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Mupr362g00001 526 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 470 - -
Mupr362g00001 526 CDD RRM2_Hrp1p 107 184 - -
Mupr362g00001 526 Gene3D - 103 190 IPR012677 -
Mupr362g00001 526 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Mupr362g00001 526 MobiDBLite consensus disorder prediction 79 105 - -
Mupr362g00001 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mupr362g00001 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Mupr362g00001 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Mupr362g00001 526 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Mupr362g00001 526 Gene3D - 6 87 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr362g00001 Mupr-Chr362 3187 8511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr362g00001 8 237 Eukaryotic Initiation Factors Gene Family AT1G34140 26.190 7.81e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr362g00001 K14411 - gmx:100805131 811.216