LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr3628g00001	ATGGGCCAGTGCTATGGCAAGACCAATCTCACGCCGGAAAATGACGCCACCGCAGCCACCGTCGTGCTCGCCGGATCCGGCGACGTCCCGCCCTCTCCGCTTCCGGCCAAGGACACGCCGGCGCGGTCCAGCCCCTGGCCGAGTCCCTACCCTCACGGCGGTGGTGTGACGCCGTCGCCAGCGAGGGGCACGCCGAGGAGGTTTTTCCGGCGGCCGTTTCCGCCGCCTTCGCCGGCGAAGCACATAAGGGCGTCGCTGGCGAAGCGGCTGGGGCATGCGAAGGCGCCGAAGGAGGGGCCGATCCCGGAGGAGGAAGCGGCGGCGGCGGCGGCGGAGCAGTCGCTAGACAAGAGCTTTGGGTATGGTAAGAATTTTGGGGCAAAATATGAAATTGGGAAAGAAGTGGGGCGAGGGCATTTTGGTCATACTTGCTATGCTAAGGGGAAGAAGGGTGAACTCAAAGACCAACCAGTTGCAGTTAAAATCATTTCCAAGGCTAAGATGACCACTGCAATAGCAATTGAAGATGTTCGCAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATATACATCTCATCAAATATCATGATGCTTTTGAGGATGCCAACAATGTGTACATAGTTATGGAGGGAGGAAAGTATTCGGAGGAGGATGCCAAGGCTATAGTTTTGCAGATCCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTGAAACCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTTTCTGACTTCATCCGGCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTCTGGAAGCAGATATATGGAGTATTGGTGTTATTACCTATATTTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACCGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTACTGCCTCTGCAGAGGCCAAGGACTTTGTAAAACGGCTCCTAAACAAGGACTACAGGAAAAGAATGACAGCTGTCCAAGCTCTAACTCATCCTTGGTTGAGGGATGACAGTCGCCCCATCCCTTTAGATATATTAGTTTATAAACTAGTGAAGGCTTATCTTCATGCAACACCATTCAAACGTGCAGCCGTGAAGGCCCTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGCACAATTCAGATTGTTGGAACCAAATAGCGACGGGCACATCTCCCTTGACAATTTCAAAATGGCTCTTGTACGCCATGCAACTGATGCCATGAGGGAGTCAAGGGTTCTTGATATCATAAATGCGATGGAGCCACTTGCCTATAGAAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCACATATCAATTGGAGGCACTTGATAGGTGGGAAGATATTGCCTCAACTGCTTTTGAACATTTTGAGAGAGAGGGCAATCGTCTGATATCGGTTGAAGAAATAGCCAGAGAGTTGAATGTTGGGCCTTCAGCTTATTCAATTCTCAAAGATTGGATTCGAAACACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCCAACCCAAGACACCGTTTTACTTGGCTAGAATATTAA	1722	0.4826	MGQCYGKTNLTPENDATAATVVLAGSGDVPPSPLPAKDTPARSSPWPSPYPHGGGVTPSPARGTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKAPKEGPIPEEEAAAAAAEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHIHLIKYHDAFEDANNVYIVMEGGKYSEEDAKAIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILVYKLVKAYLHATPFKRAAVKALSKALPEDELPYLRAQFRLLEPNSDGHISLDNFKMALVRHATDAMRESRVLDIINAMEPLAYRKMDFEEFCAAAISTYQLEALDRWEDIASTAFEHFEREGNRLISVEEIARELNVGPSAYSILKDWIRNTDGKLSLLGYTKFLHGVTLRSSNPRHRFTWLEY	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr3628g00001	573	ProSitePatterns	Protein kinases ATP-binding region signature.	135	161	IPR017441	GO:0005524
	Mupr3628g00001	573	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Mupr3628g00001	573	SUPERFAMILY	EF-hand	403	556	IPR011992	-
	Mupr3628g00001	573	PANTHER	SERINE/THREONINE-PROTEIN KINASE	113	542	-	-
	Mupr3628g00001	573	Gene3D	Phosphorylase Kinase; domain 1	125	210	-	-
	Mupr3628g00001	573	Pfam	Protein kinase domain	129	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr3628g00001	573	Gene3D	Transferase(Phosphotransferase) domain 1	211	384	-	-
	Mupr3628g00001	573	ProSiteProfiles	Protein kinase domain profile.	129	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr3628g00001	573	FunFam	CDPK-related kinase 1	413	485	-	-
	Mupr3628g00001	573	ProSiteProfiles	EF-hand calcium-binding domain profile.	418	453	IPR002048	GO:0005509
	Mupr3628g00001	573	Gene3D	-	385	557	-	-
	Mupr3628g00001	573	FunFam	CDPK-related kinase 1	122	217	-	-
	Mupr3628g00001	573	SUPERFAMILY	Protein kinase-like (PK-like)	121	396	IPR011009	-
	Mupr3628g00001	573	SMART	serkin_6	129	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr3628g00001	573	MobiDBLite	consensus disorder prediction	33	54	-	-
	Mupr3628g00001	573	CDD	STKc_CAMK	128	376	-	-
	Mupr3628g00001	573	MobiDBLite	consensus disorder prediction	90	109	-	-
	Mupr3628g00001	573	MobiDBLite	consensus disorder prediction	24	80	-	-
	Mupr3628g00001	573	FunFam	CDPK-related kinase 1	206	391	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr3628g00001	Mupr-Chr3628	3163	11501	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr3628g00001	32	561	EF-hand Containing Proteins	AT3G50530	59.689	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Mupr3628g00001		Pkinase	9.3e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr3628g00001	K13412		-	gmx:100796256	1029.24