Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3621g00003 ATGGTACAAGGGAATCTCACCGATTCCTTGTGTTTCTCTTCCGTTTCGGGTCTCAAAATACCAGTTTTAGGACTTTTAGTGTTGCAAATTGCTGAGGGTTTTGTTGGGGTGGTGGCTTTGATTTCCATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCAAAGACAGAATCTGAATTCAGTGTTCAGAAGCTGGTTGATATGTTCACAAAGTTGAATCCCTTGGCTAAGGAGTTTTTCCCTTCATCATATTCCCCAAATCACGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCATTTTCTGGTCACTACTAAGCCCTCTGCTAATGAGAATTTCCCAATCAATCGAAGGAGAAGAAATAGTTTTAACCAAGGGAGGAGAAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAGCGTGAAATGTGTGCCCGGACTGTCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGAGAGGTTATGCGCCTGAGGCTTTTGGGGGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTGTTGGGAGCCCAGCCTATAAGGGTTAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGACCTGCTTCGCATTAA 1017 0.4366 MVQGNLTDSLCFSSVSGLKIPVLGLLVLQIAEGFVGVVALISMAAVAEIPADANKMDSKPKTESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRLQGFNQLSPTHFLVTTKPSANENFPINRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGAQPIRVSPSKTPVRPRVTRPASH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3621g00003 338 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 74 332 - -
Mupr3621g00003 338 Gene3D - 238 332 IPR012677 -
Mupr3621g00003 338 Gene3D - 113 229 IPR012677 -
Mupr3621g00003 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 326 IPR000504 GO:0003723
Mupr3621g00003 338 SUPERFAMILY RNA-binding domain, RBD 241 332 IPR035979 GO:0003676
Mupr3621g00003 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 217 IPR000504 GO:0003723
Mupr3621g00003 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 319 IPR000504 GO:0003723
Mupr3621g00003 338 FunFam Polyadenylate-binding protein-interacting protein 10 244 322 - -
Mupr3621g00003 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 228 IPR000504 GO:0003723
Mupr3621g00003 338 CDD RRM1_CID8_like 151 230 IPR034823 -
Mupr3621g00003 338 FunFam Polyadenylate-binding protein-interacting protein 11 117 230 - -
Mupr3621g00003 338 CDD RRM2_CID8_like 246 327 IPR034825 -
Mupr3621g00003 338 SMART rrm1_1 251 322 IPR000504 GO:0003723
Mupr3621g00003 338 SMART rrm1_1 154 224 IPR000504 GO:0003723
Mupr3621g00003 338 Pfam Ataxin-2 C-terminal region 74 89 IPR009818 -
Mupr3621g00003 338 SUPERFAMILY RNA-binding domain, RBD 122 229 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3621g00003 Mupr-Chr3621 13299 19935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3621g00003 150 307 Eukaryotic Initiation Factors Gene Family AT1G34140 26.708 9.48e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3621g00003 - - gmx:100818291 570.852