Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3593g00004 ATGCCGCCCAATTCCCATTTCCCGCCACAACCCGCACTATACAAAACCACACTCTCGCTCTCATCGCACTCTCATTCTCTCTCTACTCTTCCAATTCCGTTCTCCGAAACTTCCCACACACACTTTCTTCCAATGGCAGCCAAATCAGTCACCCCCGACGCCGTTTCGATGCTCCTCGCAAACCCTTCTCCTGACGCTTCATCGGATCTTCCTGAAATCGTCGTCCAAGTCCTCGATCTCAAGCAGAGCGGCAACAGATACATGTTCACTGCTAGCGATGGAAAAATGAAACTTAGGGCGATTCTTCCGTCGAATATGTACTCTGAGGTGCTCTCGGGGAATATTCAAAACCTAGGTCTTGTTCGCATTCTTGATTACACGCTCAACGATATCCCCAACAAATCAGAGAAATACCTTATTGTCACGAAATGTGAACCTGTGTCTCCCGCGCTTGAGACGGAGATAAAGAGTGAGGTACCTGGGATTGTTTTGAAGCCCAAGGAAGAGGGTGAAGTGAAGAGTGAAGGTGCTGCTAGGATTCTTCTGACGCCGAAGCAGGAAGTGGTGACAAAATCTGCCGCTCAGATTCTACGCGAACAGCATGGAAATTCGGCTCCTGCTGCACGAATGGCCATGACGCGTAGGGTGCATCCTCTGGTTTCGTTGAACCCTTATCAGGGTAATTGGACGATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTTGAATTGACGGACGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATGATGCTGCGAGAAAGTTTTTTGACAAGTTTGTTCTGGGGAAGGTTTATTACATTTCAAAGGGGACTCTGAAAGTTGCCAACAAACAGTTTAAGACCGTGCAAAACGATTATGAAATGACGCTAAATGAGAATTCTGAGGTGGAAGAGGTGGCGAGTGAAGCGAGTTTTGTTCCGGAAACAAAATTCAACTTTGTCCCAATTGATCAGCTGGGTCCCCATGTTAATAAGTCTGAACTTGTGGGTGAGTGTTGTTTTGAAGATGTGCTAATCGTTGTCGTTTATTCTCTTGCTGCTCTTCTATTGATTGTATCTGCTATAATCTCAGATGTTATTGGGGTTGTTAAGAATGTATCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCGAAGCGTGACATTACCATTGCTGATGAAACGAAGAAGACGGTGGTTGTGTCCTTGTGGAATGATCTTGCAACTAACACAGGACAGGAGTTACTGGACATGGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAGGGTGGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTAATAAATCCAGACATACCCGAATCAAAGAAACTCAGATGCTGGTATGATTTTGAAGGTAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAATGTCTAACAATGGAGTTAGATCGGTGTACTCTGATCGTGTTTCACTTTCTCACATAACCTCAAACCCATCACTGGGGGATGGCAAGCCTGCATTTTTCAGTATTAGAGGATATGTAAGCTTTATAAAGCCTGACCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCATTGGCTCTGGATATTGGTGCGAAGGATGCCAGAAAAGTGATGAAGAGTGCAGTTTAAGGTATATTATGGTTGCCAGAGTTTGTGATGCAAGTGGTGAGGGTTATATCTCCGTCTTCAATGAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAAGGAGAAGATAATCCTTATCAGCTGAAATTGAAGCAAGCTACTTGGGTTCCACATCTTTTCCGGGTTAGTGTTACTCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGATTATGCTGGAAGATATATCAAAGATGAGAGCATAA 2070 0.444 MPPNSHFPPQPALYKTTLSLSSHSHSLSTLPIPFSETSHTHFLPMAAKSVTPDAVSMLLANPSPDASSDLPEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALETEIKSEVPGIVLKPKEEGEVKSEGAARILLTPKQEVVTKSAAQILREQHGNSAPAARMAMTRRVHPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVASEASFVPETKFNFVPIDQLGPHVNKSELVGECCFEDVLIVVVYSLAALLLIVSAIISDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQELLDMVDKSPVVAIKSLRVGDFQGVSLSTIGKSVVLINPDIPESKKLRCWYDFEGKDAAMDSVGSGSSPMSNNGVRSVYSDRVSLSHITSNPSLGDGKPAFFSIRGYVSFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKSDEECSLRYIMVARVCDASGEGYISVFNEEAEKIVGCSADDLDNLKSQEGEDNPYQLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAESRIMLEDISKMRA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3593g00004 689 Gene3D - 215 324 IPR012340 -
Mupr3593g00004 689 PANTHER REPLICATION FACTOR A 1, RFA1 229 650 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mupr3593g00004 689 SUPERFAMILY Nucleic acid-binding proteins 216 324 IPR012340 -
Mupr3593g00004 689 Pfam Replication factor-A C terminal domain 534 679 IPR013955 -
Mupr3593g00004 689 CDD RPA1_DBD_C 518 686 IPR047192 -
Mupr3593g00004 689 SUPERFAMILY Nucleic acid-binding proteins 513 687 IPR012340 -
Mupr3593g00004 689 SUPERFAMILY Nucleic acid-binding proteins 375 489 IPR012340 -
Mupr3593g00004 689 Pfam OB-fold nucleic acid binding domain 229 315 IPR004365 GO:0003676
Mupr3593g00004 689 CDD RPA1_DBD_B 381 485 - -
Mupr3593g00004 689 Gene3D - 498 687 IPR012340 -
Mupr3593g00004 689 Gene3D - 329 497 IPR012340 -
Mupr3593g00004 689 Gene3D - 49 159 IPR012340 -
Mupr3593g00004 689 SUPERFAMILY Nucleic acid-binding proteins 49 152 IPR012340 -
Mupr3593g00004 689 FunFam Replication protein A subunit 215 324 - -
Mupr3593g00004 689 FunFam Replication protein A subunit 49 159 - -
Mupr3593g00004 689 CDD RPA1_DBD_A 218 321 - -
Mupr3593g00004 689 FunFam Replication protein A subunit 500 687 - -
Mupr3593g00004 689 Pfam Replication protein A OB domain 379 471 IPR031657 -
Mupr3593g00004 689 FunFam Replication protein A subunit 365 495 - -
Mupr3593g00004 689 Pfam Replication factor-A protein 1, N-terminal domain 50 147 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3593g00004 Mupr-Chr3593 31869 35200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3593g00004 49 686 Core DNA Replication Machinery Family AT5G08020 66.510 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3593g00004 K07466 - gmx:100777091 1031.17