Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3586g00001 ATGGAGGAATACAATAATAATCAGCTGAGCGAAAACACAAGTCCAAGTTCAAGGGCAAATTTGTTGTACACCATGGCCGGTGGTTCAAGCTTAGGAAACCACCACCACGAGCTTCCGTTTAACACCTTTCATCTTCAATCGGGTGGATCGGAACACTGTTTTCAACCTGATCAAATACCACATCTTAATGTGAAAACCAAGTCCAACAACTCCCTCCTTCATTCTCCTATCTTCCACTATCCTTCAATGAGACCAAATCTTCACACGCTGCATCCTCCGCAAGGAGCGAGCCAGAGCCCTAACGAACTTGAAGCCATAAAAGCCAAAATCATCGCCCATCCTCACTTCTCCAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTGGCTGCGGTTCGGGAGGATTTTGAGGCACGACAGCGATCTTTGATTAGGTCATCCAGGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCGTACTATGACATGCTTGTGAAGTACCGAGAGGAATTAACGAGGCCTATACAAGAGGCTATGGATTTCATGCGGAGGATAGAAACTCAGCTGAACATGATCTGCAATGGAACCGTGCGGATCTTCTCTGATGATAAGTGTGAAAACATTGGTTCATCGGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAACTGCCCGAGATTGATGCCCGGGCAGAAGACCGTGAACTCAAAAGCCACTTGCTGAGGAAGTACAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAAAAAGGAAAATTGCCAAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATCACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGCTGGCTGAAGCAACTGGTTTGAACCAAAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAACCATCGGAAGACATGCAATTTATGGTTATGGATGGCCTGCATACGCAGAACGCAACTCTCTATATGGATGGGCATGGCCACTACATGGCTGATGGCCATTACCTATCTGGTAGCAACAATAACTCACATCGAGGTCCCATTGTTGGATATCTTCAGAATTGA 1152 0.4531 MEEYNNNQLSENTSPSSRANLLYTMAGGSSLGNHHHELPFNTFHLQSGGSEHCFQPDQIPHLNVKTKSNNSLLHSPIFHYPSMRPNLHTLHPPQGASQSPNELEAIKAKIIAHPHFSNLLQVYMDCQKVGAPPEVVARLAAVREDFEARQRSLIRSSRETCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMICNGTVRIFSDDKCENIGSSEEDQDNSGGETELPEIDARAEDRELKSHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWESHYKWPYPSESEKVALAEATGLNQKQINNWFINQRKRHWKPSEDMQFMVMDGLHTQNATLYMDGHGHYMADGHYLSGSNNNSHRGPIVGYLQN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3586g00001 383 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Mupr3586g00001 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 338 - -
Mupr3586g00001 383 FunFam Homeobox protein knotted-1-like 2 273 335 - -
Mupr3586g00001 383 Pfam ELK domain 248 269 IPR005539 GO:0003677
Mupr3586g00001 383 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Mupr3586g00001 383 SMART HOX_1 270 335 IPR001356 GO:0003677
Mupr3586g00001 383 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Mupr3586g00001 383 Gene3D - 273 335 - -
Mupr3586g00001 383 SMART ELK_2 248 269 IPR005539 GO:0003677
Mupr3586g00001 383 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Mupr3586g00001 383 CDD homeodomain 280 332 IPR001356 GO:0003677
Mupr3586g00001 383 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Mupr3586g00001 383 SUPERFAMILY Homeodomain-like 269 342 IPR009057 -
Mupr3586g00001 383 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Mupr3586g00001 383 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Mupr3586g00001 383 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Mupr3586g00001 383 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3586g00001 Mupr-Chr3586 1193 7618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3586g00001 50 367 Homeobox Transcription Factor Family AT4G08150 65.549 1.94e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr3586g00001 KNOX2 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3586g00001 - - aprc:113866252 593.578