Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3556g00006 ATGGCATCAACATCTTGCGTGAAAGAGGCAGCACCAGTTCTGATGTCTCAACCGTATCCACCACCTCTCGCAAAATATGAAGATGTTGTGGCAAATCCTAAGCTCTTCATGTTTACCTTGGAGAAGCTCCATGCTTCTATGGGCACCAAGTTCATGATTCCTATCATTGGCGGAAAAGAACTAGATTTGTGTCGCCTCTTTATTGAAGTAACTTGTCGCGGAGGGATTGAGAAGCTTATTAAAGAAAGAAGATGGAAAGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCATTTGTGCTGCGGAAATACTATTCTTCATTGCTTTATCACTACGAACAAATCTACTATTTTAAAGCCAATCGATGGACTCGTACAACTCCTGATGCTCTGCAGAATCAATCAACGGCATCAATTCATGATCAAAGAACACACTTTTCACAGTCTTCTCCAGGAATTCATTCAGCTGTCTTTCAACAGTCAAGGGTTAATGCTGCTGATGTGCCTGAAGGATCTCCAGTGGTTGGAGTCATTGATGGCAAGTTTGAAAGTGGCTATCTAGTTTCTGTTTCAGTAGGTTCACAGATGTACAAAGGCGTACTATATGAGGCTCCACAAACCTCTGTGTTGCCTGCATCTGCACCACATGGTCAAAATACTATGGTTAAGACCAACAATTCCAATGCCTCTGCGTCATTGGGTGTTCATCGTCGCCGACGCCGGAAGAAATCAGAGATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGCTACAATTTCTTCTTTGCGGAGCAGCATGCAAGACTCAAGCAACTACACCATGGCAAAGACAGGGATATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTGAAAGAGCCGGAAAAATCTGTTTATCAAGAGAAGGCTGTTAGAGATAAAGAGAGGTACAGAGCAGAAATGGAGGAATATCGTGAGAAACTGAAGATGGGCCGTGTTATCAGTGATGCCGTGCCACTTCAACAACGGCTTCCTGAAGCAGATGCAGCTTTGGTAGATGTGGATGTAAAAATGGTAGGTTCTGAGGAGAGCAGTTCTGGTGGAAGTGAGTATGACGATGTCAATATGGATGCTGAAGCTACCTTTGTGGGGCCCGACAAGGATGGAGGTTATGAGTTTCTTCACCATTGCGAGACAGAAGGGGGTACTCAAGTTCAAAACATGAGTGAGAGCAAAAATATGCTGGCACTATTT 1254 0.4346 MASTSCVKEAAPVLMSQPYPPPLAKYEDVVANPKLFMFTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTCRGGIEKLIKERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFKANRWTRTTPDALQNQSTASIHDQRTHFSQSSPGIHSAVFQQSRVNAADVPEGSPVVGVIDGKFESGYLVSVSVGSQMYKGVLYEAPQTSVLPASAPHGQNTMVKTNNSNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKQLHHGKDRDISRMIGELWNKLKEPEKSVYQEKAVRDKERYRAEMEEYREKLKMGRVISDAVPLQQRLPEADAALVDVDVKMVGSEESSSGGSEYDDVNMDAEATFVGPDKDGGYEFLHHCETEGGTQVQNMSESKNMLALF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3556g00006 418 Gene3D - 23 140 IPR036431 GO:0003677
Mupr3556g00006 418 SUPERFAMILY ARID-like 28 126 IPR036431 GO:0003677
Mupr3556g00006 418 SUPERFAMILY HMG-box 246 329 IPR036910 -
Mupr3556g00006 418 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 258 325 IPR009071 -
Mupr3556g00006 418 MobiDBLite consensus disorder prediction 238 252 - -
Mupr3556g00006 418 Pfam HMG (high mobility group) box 258 325 IPR009071 -
Mupr3556g00006 418 Coils Coil 307 327 - -
Mupr3556g00006 418 FunFam High mobility group B protein 15 240 335 - -
Mupr3556g00006 418 MobiDBLite consensus disorder prediction 217 265 - -
Mupr3556g00006 418 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Mupr3556g00006 418 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 365 - -
Mupr3556g00006 418 SMART ARID_2 27 117 - -
Mupr3556g00006 418 Gene3D High mobility group box domain 242 335 IPR036910 -
Mupr3556g00006 418 CDD HMG-box_AtHMGB9-like 258 324 - -
Mupr3556g00006 418 SMART hmgende2 257 326 IPR009071 -
Mupr3556g00006 418 FunFam High mobility group B protein 15 24 138 - -
Mupr3556g00006 418 SMART bright_3 31 122 IPR001606 GO:0003677
Mupr3556g00006 418 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Mupr3556g00006 418 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Mupr3556g00006 418 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3556g00006 Mupr-Chr3556 56041 58712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3556g00006 1 358 ARID Transcription Factor Family AT1G04880 58.266 4.56e-128 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr3556g00006 ARID 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3556g00006 - - gmx:100783284 519.235