Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3553g00003 ATGGACCAAAATGGACAAAGGCGATCAACAAGATTGGTTGGTTCTCGTTCTCAGGCCCAAGCCTATGTGAGAAACCAGAGTGAACGCAACCAGCAAGGGCTACCACCATCCACCATTTCTCGAGCCCACATCATAAGGCAGCGCCGACTCACTTGGCCCAACCTATCACTCCCCACAGATTCTCAAGCCCATGTCGAAGCCCAGCAAGAACGCACTGCGCCCAGTCCTGGAGGCCCATTAGCCTTCTCAACCTTCCCGGTAGGCCTACCCCAGCAAGACCCGAATGTTCCCCTGACGAATGAGCCCAATCCCCAGCCCGAGGTTGAGCCCGAGCCTGAGTTGCAACATGACCTCTTCAACTTTTGGGCCCGACAGAACCAGGAGGTGGAGAACACCACCAATTTTAGGACCCACTCCCTTCCCTTATCCCGAATCAAGAGGATCATGAAAAGAGACGAGGATGTGGGCATGATATCAGCTGATGCATGTGTTGTCTTTTCCAAGGCATGTGAGATCTTCATCAAGGAACTCACAACAAGGTCTTGGGTCCATGCTGAGGAGAATAGAAGGAGGACACTCCATAGGGGTGACATTGCAACCACAATTGCTCAGACTCAGGTGTTTGATTTTTTGGTGGATTATGTTCCTCTGGATAACTCAATGGAACATAACATGCATTCAGGCCTTCACAAAGGTGGTGGAAGTTCTGAGAATGTTAGGATTGCTCCTAATTGTGATGTTATGCCACCACCACCCAGGAATGTCAGGGATGAAACTTCTGGATATCCTAGGCTGATTACGATAATGGATCCTACCCCTCAGGATCCTGTTGGGAATGGGAACCTTGTGATTGGTCCTGTGGCAGATCAAGTGTGGCCAGAACAACAACATAATGATGATGCTCCTCCAGATTTTGATGAAAATTGA 927 0.4962 MDQNGQRRSTRLVGSRSQAQAYVRNQSERNQQGLPPSTISRAHIIRQRRLTWPNLSLPTDSQAHVEAQQERTAPSPGGPLAFSTFPVGLPQQDPNVPLTNEPNPQPEVEPEPELQHDLFNFWARQNQEVENTTNFRTHSLPLSRIKRIMKRDEDVGMISADACVVFSKACEIFIKELTTRSWVHAEENRRRTLHRGDIATTIAQTQVFDFLVDYVPLDNSMEHNMHSGLHKGGGSSENVRIAPNCDVMPPPPRNVRDETSGYPRLITIMDPTPQDPVGNGNLVIGPVADQVWPEQQHNDDAPPDFDEN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3553g00003 308 Gene3D Histone, subunit A 107 216 IPR009072 GO:0046982
Mupr3553g00003 308 SUPERFAMILY Histone-fold 116 211 IPR009072 GO:0046982
Mupr3553g00003 308 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 109 227 - -
Mupr3553g00003 308 MobiDBLite consensus disorder prediction 88 111 - -
Mupr3553g00003 308 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 139 200 IPR003958 -
Mupr3553g00003 308 MobiDBLite consensus disorder prediction 1 38 - -
Mupr3553g00003 308 MobiDBLite consensus disorder prediction 1 39 - -
Mupr3553g00003 308 FunFam Nuclear transcription factor Y subunit gamma 107 217 - -
Mupr3553g00003 308 MobiDBLite consensus disorder prediction 289 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3553g00003 Mupr-Chr3553 11965 13421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3553g00003 121 232 CCAAT-HAP5 Transcription Factor Family AT1G56170 60.714 1.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mupr3553g00003 CBFD_NFYB_HMF 3.6e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3553g00003 K08066 - aprc:113855583 229.95