Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3539g00002 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATTGACAATTCCACAAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGGTTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGCGATGCACAAGTTGGACTTGTCATATTCTCCAGCACAGGAAAGCTTTACGAATATGCAAGCACCAGCATGAAATCATTGATCGAGAGATATGCCACATGCAAGGAAGAACATCACCATCTGATAAATCCAGAATCCGAAGTCAAGAGGGAGGCAGAAATTCTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAACTTTATGGTCTGAGTGTCAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAACAAATTCTAAGAGATGAAATCGAAGAGCTGAACCGAAAGGGAAACCTCATCTATCAAGAAAATGTGGAACTTTACAAGAAGGTCTACGGTACAACAGATATGGCCATAACAAGCACAAATGCATTTGTTCCACTTCCATATGGTATGCATGTAGGAGGGCATCCACAACAGTTGATCCAACTTCAGTTATGCCAGCCTGAGCAAGAAGTTTGTGAGACATCGGACACTGCCACAAAATGA 657 0.4292 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASTSMKSLIERYATCKEEHHHLINPESEVKREAEILRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILRDEIEELNRKGNLIYQENVELYKKVYGTTDMAITSTNAFVPLPYGMHVGGHPQQLIQLQLCQPEQEVCETSDTATK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3539g00002 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr3539g00002 218 Coils Coil 120 140 - -
Mupr3539g00002 218 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Mupr3539g00002 218 Coils Coil 83 110 - -
Mupr3539g00002 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mupr3539g00002 218 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr3539g00002 218 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mupr3539g00002 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr3539g00002 218 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mupr3539g00002 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3539g00002 Mupr-Chr3539 4812 16169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3539g00002 1 216 MADS-box Gene Family AT2G22630 58.369 2.24e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr3539g00002 K-box 6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3539g00002 K09264 - gmx:100778427 392.889