Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3505g00001 ATGGGTCGTGGAAGAATACCTATGGAACTGATTAAGAAGGAGAAAGCCCGGAAGACAACATTTCACAAGAGAAAGAACGGCTTAATGAAGAAAGTTTACGAGTTTTCCACTCTTTGTGGGGTTGATGTTTGTGTAGTTCTCGATGCTCCCAATTTTCTAGATGTACCTGAAACATGGCCCCAGGACTCAAGAGAGGTAACACGCGTCATTCAGAAATTTCAGAACACCACTAGTGACAGGCGTCCTAAGGTGTATAACGTGCAAGAGTATTATAACGATAGGATGAAAAAGGTTGAAGGTGAGGTTTCCAAAGTGCAGAAAGAGAAGATCAAGATCATGTACCCAACCTGGGATGACTCTTACAATACTCTTGGAGAGGATCAATTGAGGGTGTTTATTAATATTCTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAATATGTTAAAGCGAGGCTTTAAGGGAAAAGCAATAGCAGAATCTGAATCAGACAAAGCTGAGAGACTTACTCCCTACATGGCCTCAAATATAGGTAGTCATATCAATTTCATGCAGAACATGTCTCAAACACAACTTCTCCCTCCTATGAATTCAATTAGTGATAACAACCAAGTAGCATTTTACCCATTTCAGCTTAGCCAAAGTTCTCAATCTTCTATGTTTCATTTTGGTCAAAATTGTCCTCAATTGATGCAAAAAAATGCAATGGTGGATTGGGCTAATCAAGTTGGTGCTGTTGCTTGTGATCCCAAAATGGGTGATGGATCTGACAAAAACCATAACTCCTCAGCATGCTATTACAATGGAAATATGCAAACAACTCAGCCATATCTTCCTTCTCAATTGCAGTACGATGGAACTTTCCAGACCCTACCAGAGCCACCGGGACCACCCCCAGGGTTGAATACGGATTTTAACATTTTACGCAATGGTCTTCAAAACACGGCTACTTGTATGTCATCTCACGACAGTGTTTGA 981 0.4077 MGRGRIPMELIKKEKARKTTFHKRKNGLMKKVYEFSTLCGVDVCVVLDAPNFLDVPETWPQDSREVTRVIQKFQNTTSDRRPKVYNVQEYYNDRMKKVEGEVSKVQKEKIKIMYPTWDDSYNTLGEDQLRVFINILDAKLDACNQRMNMLKRGFKGKAIAESESDKAERLTPYMASNIGSHINFMQNMSQTQLLPPMNSISDNNQVAFYPFQLSQSSQSSMFHFGQNCPQLMQKNAMVDWANQVGAVACDPKMGDGSDKNHNSSACYYNGNMQTTQPYLPSQLQYDGTFQTLPEPPGPPPGLNTDFNILRNGLQNTATCMSSHDSV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3505g00001 326 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Mupr3505g00001 326 PANTHER MADS BOX PROTEIN 3 123 - -
Mupr3505g00001 326 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mupr3505g00001 326 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mupr3505g00001 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr3505g00001 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr3505g00001 326 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Mupr3505g00001 326 CDD MADS_SRF_like 2 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr3505g00001 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3505g00001 Mupr-Chr3505 6199 7387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3505g00001 1 146 Type I MADS-box Gene Family AT5G55690 36.424 5.12e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr3505g00001 SRF-TF 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3505g00001 - - ccaj:109800518 444.121