Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr3493g00006 | ATGGAGCCATCATCGATCTCTCCACCGCCAGTTCCGCCTGCCACCGCCGTGCCCTTTCCCGCCGAGCCCAACGACCATCCTCCAGCGCCCATTCCTGAACCACCTTCCAACCACCCACCCTATGCTGAGATGATATACACGGCAATCGAGGCGTTGAAAGAGCAGAACGGTTCGAGCAAGAGGGCCATAGGGAAGTACATAGAGCAAGTGTACAAGGAGCAGCTTCCACCGAATCACTCTGCCTTGTTGACTCACCACTTGACTCGTTTGAAGAACAACGGAATGCTTCAAATGATAAAAAATTCCTACGCTCTTCCTAGATCTGCGCCTGTTCCTGGACTGGCTGCACCCGCAGTACCTGCCTCTGCTTTGCCGAGCCCGAGGCCCAGAGGCCGGCCTCGCAAGGCCCAAACCCCGGTTCAGAACTTGCCCCTGCAGTCCCAGCCCCAAGGTGCTGCCAACGTGCAGCAGAATGCCGAGCCTGTTTGGGCTGCGCTTGGACTCGCGGACGAGCCCGTGCAGGCTGAGGGCGGCAAGAAGGGTCCGGGCCGTCCGAAGAAGAACGCGGGAGAAGGCTATTCCAGCCCGGCCCGGAAAGAGCGTCCTCCTGGTTCAGTCTCTCAGAAAAAGCCGGGCCGTCCTCCCAAGGTTAAGCCCGAGACTACAGAGGCTTCTGTCGGGCCGAAGAGGCGCCCAGGCCGTCCGCCAAAGAATCAAACGATAGCTACTCCCATTCCCTTCGCTCCGGCTGCACCTGCTGTCCCCGGTGCAGAGCCCGTGGCTGAACCAGTTGCTGCGGGTGATGCTGGGATTGTTCTCGGGCCCAGAGTCCGGGGACGGCCGAAGAAATACGCTGATGAGATTGTTGCAGCGGGCCGAGGCAGGGGCCGCGGTCGAGGCCGTGGACGAGGCAGAGGCCGTGGGGGATTGCCTGCGCTGCCTAGAAAACCCGGGGCGAGGCCTGTTGGCCGCCCGAAGAAGGTGATGCATGGGTCAACTTATGCTAGTACTTCACAAAATGGTGCTAATGAAGATCTCAGGAGGAAACTTGAACACTTCCAATCAAAAGTGAAGGAATCTCTTGCAGTGCTTAAGCCTCATTTTAACCACGAGAGTCCAGTGACTGCAATTGCAGCCATTCAAGACTTAGAAGTACTGGGAACCATGGACCTCAATGCACCACTGAGGGATGAAACACTTCCACAGCAAGAGGAGCTGCCGCCGCCACAGCCACCAGTGCAGCAACAGCCACCGCCACCACAGCCACAGCTCCCAACACCACAGCAACAGCAGCAGCAGCCACCACAACATCTATCACAACCCCCACTGCTGCATCAGGCACAGCTATTTCAGCAACAATTTCCCCCCTTTCATCTGGCGTCACAGTTCCACCACCACCAGCCGCTGCAGTTCCAGCAACAGCCACCACCACAGCCGCCACAGCTATTCCAGCACCAGCCACCGGCACCACACCACCAACAATTTCATCCTTAG | 1494 | 0.5837 | MEPSSISPPPVPPATAVPFPAEPNDHPPAPIPEPPSNHPPYAEMIYTAIEALKEQNGSSKRAIGKYIEQVYKEQLPPNHSALLTHHLTRLKNNGMLQMIKNSYALPRSAPVPGLAAPAVPASALPSPRPRGRPRKAQTPVQNLPLQSQPQGAANVQQNAEPVWAALGLADEPVQAEGGKKGPGRPKKNAGEGYSSPARKERPPGSVSQKKPGRPPKVKPETTEASVGPKRRPGRPPKNQTIATPIPFAPAAPAVPGAEPVAEPVAAGDAGIVLGPRVRGRPKKYADEIVAAGRGRGRGRGRGRGRGRGGLPALPRKPGARPVGRPKKVMHGSTYASTSQNGANEDLRRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQDLEVLGTMDLNAPLRDETLPQQEELPPPQPPVQQQPPPPQPQLPTPQQQQQQPPQHLSQPPLLHQAQLFQQQFPPFHLASQFHHHQPLQFQQQPPPQPPQLFQHQPPAPHHQQFHP | 497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr3493g00006 | 497 | FunFam | Histone H1.2 | 34 | 115 | - | - | |
| Mupr3493g00006 | 497 | SMART | h15plus2 | 35 | 102 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 139 | 156 | - | - | |
| Mupr3493g00006 | 497 | Coils | Coil | 343 | 363 | - | - | |
| Mupr3493g00006 | 497 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 37 | 107 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 430 | 458 | - | - | |
| Mupr3493g00006 | 497 | PRINTS | AT-hook-like domain signature | 317 | 327 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | PRINTS | AT-hook-like domain signature | 179 | 189 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | PRINTS | AT-hook-like domain signature | 227 | 238 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | PRINTS | Histone H5 signature | 24 | 45 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mupr3493g00006 | 497 | PRINTS | Histone H5 signature | 51 | 68 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mupr3493g00006 | 497 | PRINTS | Histone H5 signature | 122 | 136 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mupr3493g00006 | 497 | PRINTS | Histone H5 signature | 175 | 194 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Mupr3493g00006 | 497 | CDD | H15 | 36 | 104 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mupr3493g00006 | 497 | Gene3D | - | 34 | 112 | IPR036388 | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 213 | 227 | - | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 472 | 486 | - | - | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 127 | 139 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 229 | 241 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 319 | 331 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 208 | 220 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 275 | 287 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | SMART | AT_hook_2 | 179 | 191 | IPR017956 | GO:0003677 | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 391 | 497 | - | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 288 | 346 | - | - | |
| Mupr3493g00006 | 497 | SUPERFAMILY | "Winged helix" DNA-binding domain | 32 | 110 | IPR036390 | - | |
| Mupr3493g00006 | 497 | PANTHER | HISTONE H1 | 20 | 239 | - | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 117 | 156 | - | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 169 | 257 | - | - | |
| Mupr3493g00006 | 497 | Pfam | linker histone H1 and H5 family | 38 | 101 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 404 | 429 | - | - | |
| Mupr3493g00006 | 497 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr3493g00006 | Mupr-Chr3493 | 64567 | 69769 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr3493g00006 | 44 | 150 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 31.579 | 8.80e-07 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr3493g00006 | - | - | gmx:100788215 | 448.743 |