Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3429g00004 ATGGATGACTGTATAACTATTAGTTCATCAGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGACTCTTCCCCAATGGGCTACTACTACTCAAACGAATTCAGATTATGGTGGATGGTCTATTAGGGATAGTTCTTCAAGAGGGGCAAATAGTTCGAACCCAAGCTCTTCTAATGTTTATAATCATTCACAAGTCAAGCCTCTTACCCTACCCATGTCCAGCACCAATTCACTGAACCACAGAATTGCACGAAGAGATGAACCTTCTTATCATGCCCAGAATGGACAAGCAGTTAATTCCCGAATTTCAAATACTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAGGAGGACCCTTCCTTCATCTCTTCAACCATCTCCAACTATTCCTTCTTTGCCATTTGCATCAGACAGCAGATTAAGCAACTTAAAAGATAACGTGGGCAGCAGTCAGCTTCATGATGCATATAAAAATCGTCACTATGGAGTAGGACTTAGCACGTCCAGCGACAGGGGCTATAGTCGTGACAATTTTGGCAGGGGCAATGATGAAGACCGTTTCTTGTATCAAAATGGTGGGAATAGAATTCTTCCATCACCTTTGATACCTGGAAAGACTATAACTCCACAATTTGCTAGTTCTAGTGAATCTGCATATCGTTCTGGAGCAGGTGATGAAAGGGCTGCCGAAAATGACGAGAGGCTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCAAAAACAGAATTTGACTTACCGGCTGGTCTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTACATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTTCCCTCATCCTAGCACAGAGGTCATTACAGACAAAATCAAAAACAGATGACACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGATGATGACGACAATGGTGGTGTTGATGTGGAAAAGCATAAAAAGATTGAAGAGTCTGATGGTGTAAAACCTATTAGAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTTCGCCAGTGGGCCAGGGAACTTGATGAAAAAGTTGGGGATGAAAAGCTTTCTGTTTTGATTTATCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATATGCTATTGTGACTAATGAAGTTCCCAAGCAACCATTAGTCGAGGAGGATGATATTGATGAAAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAGCAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACGGTTCTATTGAATGTGGATCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATCCAAAATACTATTGATGATTTATATAGTTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAGGTTCCAATATCCAGAAATTCTATTCATGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCACTTTGCCTCCTAAAACAATTGAGCTCAGTAAGGTGGCTTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAATCAGACTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTCTTAATGCTTTTACGTCTCCGACAGGCCTGTGACCACCCACTTCTTGTTAAAGATTATGATTCCAATCCTGTTGGGAAAGATTCCATTGAAATGGCAAAAAATCTTCCAAGGGAAATGCTGATTAATCTGTTTAATTGTTTGGAAGCAACCTTTGCTATATGTCATGTTTGCAATGATCCCCCTGAAGAACCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGAGCGGTGATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACTAATTAGTGACGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATTTCTGATGATGATGGTAGTAGTTCTGCAAATTTAAATCTGTATGATTATACACTAGTGCAGCAGAGTGCCTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGGAGTCAAATTGTAAATTGAAGAGTTCTGACTTACTGAACTCCTCTGGAGGCTGTAGAGATTCACTGTCTTCTGATAATTTATATGTTGAAGACTGTGATTCAGATGTTACAGTTACAAAACACACAAGAAGGTATTCAGAGTCCACAACCGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTCAGACATCGTTGAGAGAATCTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTGAGTGCAAGGGACAGCGCTGTTAAGGATTTCAATACTAAGCCTGAGATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTCTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAAACTCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGGATACTGGCTCTTCAGGAAGAGAAGCGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGCACTTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTCATGTTTTCTTTATAA 3051 0.4038 MDDCITISSSDDDLEEIEDPRRTLPQWATTTQTNSDYGGWSIRDSSSRGANSSNPSSSNVYNHSQVKPLTLPMSSTNSLNHRIARRDEPSYHAQNGQAVNSRISNTHGADYEKMSSQQAFRRTLPSSLQPSPTIPSLPFASDSRLSNLKDNVGSSQLHDAYKNRHYGVGLSTSSDRGYSRDNFGRGNDEDRFLYQNGGNRILPSPLIPGKTITPQFASSSESAYRSGAGDERAAENDERLIYEAALQDISQPKTEFDLPAGLLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILAQRSLQTKSKTDDTCNHKTEALNLDDDDDNGGVDVEKHKKIEESDGVKPIREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYAIVTNEVPKQPLVEEDDIDEKNGERFGLSSEFSVSKKRKKPFNGSKKSKKGRKGIDGSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIHGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTIELSKVAFSIEERAFYTKLESDSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSNPVGKDSIEMAKNLPREMLINLFNCLEATFAICHVCNDPPEEPVITMCGHVFCYQCVSEYLSGDDNMCPAVDCKELISDDLVFSKATLRSCISDDDGSSSANLNLYDYTLVQQSAYTSSKIKAVLEVLESNCKLKSSDLLNSSGGCRDSLSSDNLYVEDCDSDVTVTKHTRRYSESTTEGPIKAIVFSQWTSMLDLVQTSLRESGILYRRLDGRMTLSARDSAVKDFNTKPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGTSGTRLTVDDLKYLFMFSL 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3429g00004 1016 Gene3D - 486 608 IPR038718 -
Mupr3429g00004 1016 Gene3D - 242 327 IPR038718 -
Mupr3429g00004 1016 ProSiteProfiles Zinc finger RING-type profile. 711 747 IPR001841 -
Mupr3429g00004 1016 Pfam Helicase conserved C-terminal domain 859 956 IPR001650 -
Mupr3429g00004 1016 SMART helicmild6 873 956 IPR001650 -
Mupr3429g00004 1016 Gene3D - 610 1015 IPR027417 -
Mupr3429g00004 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 595 IPR027417 -
Mupr3429g00004 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 1014 IPR027417 -
Mupr3429g00004 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 761 IPR013083 -
Mupr3429g00004 1016 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 557 IPR014001 -
Mupr3429g00004 1016 SMART ultradead3 263 574 IPR014001 -
Mupr3429g00004 1016 SUPERFAMILY RING/U-box 709 766 - -
Mupr3429g00004 1016 Pfam Zinc finger, C3HC4 type (RING finger) 711 747 IPR018957 GO:0046872
Mupr3429g00004 1016 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 843 1009 IPR001650 -
Mupr3429g00004 1016 SMART ring_2 711 749 IPR001841 -
Mupr3429g00004 1016 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 360 447 - -
Mupr3429g00004 1016 CDD SF2_C_SNF 857 965 - -
Mupr3429g00004 1016 CDD DEXDc_SHPRH-like 267 595 - -
Mupr3429g00004 1016 Gene3D - 364 450 IPR038718 -
Mupr3429g00004 1016 MobiDBLite consensus disorder prediction 349 376 - -
Mupr3429g00004 1016 MobiDBLite consensus disorder prediction 468 487 - -
Mupr3429g00004 1016 Pfam SNF2-related domain 270 672 IPR000330 GO:0005524|GO:0140658
Mupr3429g00004 1016 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 51 1013 - -
Mupr3429g00004 1016 MobiDBLite consensus disorder prediction 1 75 - -
Mupr3429g00004 1016 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 476 607 - -
Mupr3429g00004 1016 MobiDBLite consensus disorder prediction 24 75 - -
Mupr3429g00004 1016 ProSitePatterns Zinc finger RING-type signature. 726 735 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3429g00004 Mupr-Chr3429 36097 44830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3429g00004 1 914 RAD5 or RAD16-like Gene Family AT1G50410 55.759 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr3429g00004 SNF2_N 2.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3429g00004 - - gmx:100795142 1743.78