Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3420g00001 ATGGGGAAGCCGACGGGGAAAAAGAAAGATCACGAGACTCCTCCGAAGGCGAACGGGCAAGCGAGCGCAGCCTCGGCGAGATCATGGGATGACAAGCGTACGGCGTCGTCGAAGGCGCTGGACGAGGACACGGCCATGTTCATAAACATGTCGCACGAGCTTCGCGAGGAAGGGAACAAGCTATTCCAGAAAAAGGATCACGAGGGCGCGATGCTCAAATACGAGAAGGCGCTGAAGCTCCTCCCCAAGAACCACATCGACGTTGCCCATCTCCGCACCAGCATGGCTGCCTGCTACATGCAGCTTGGTCTCGGCGAGTACCCACGCGCCATCAGCGAGTGCAACATGGCTCTTCAGGTCTCCCCCCGCTACACCAAGGCTCTCCTCCGTCGCGCCAAGTGCTATGAGGCCCTCAACCGCCTTGACCTCGCCATGCGTGACGTCCGCGTCGTCCTCAATTGGGAGCCTAATAATTCCACTGCTCTTGAGGTCTTGGATAGCTTGAGGAAAACCATGGACGAGAAGGGGATCGTCGTTGATGAGACCGAGATCGCTCTCGCCGCTCTGCAGCAGCAGCCCGAGCCCCCCGTGGCGCGGTTTCGGAAGGTGGTCAGGGAGAAGATGAAGAAGAAGAAGGAACAGAAGGGTGAGGACCAAGGAACATCCAAGAATTTGGTTAATCTTGAGAAGGTCAAGGTTGAGAGCTTTAAGAAAAAGGATACTAAACTCAAGGACAAGGACAAGGATAAGGATAAGGATAAGGAGAAGGAGAAGCAGAAGGAGAAGGAGAAGGAGAAGGATAATAAGGAGAAGGGGATTAAGGAGTTTGTTAAGGAAGAGAAAGAGAAGCAGAAATTGGGGGAGAAAGAAAAAGGGGTTATTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGGTGGGCGCAATTGCCCGTGAATTGTGGAATGAGGTTGGTGAGGGATGTGATAAGGGATAGGTATCCAGGGTTGAAGGGTGTTCTTGTGAAGTATAGGGATAGGGAGGGTGATTTGGTTACTATTACTAGTACTGCTGAATTGAGGTTGGCTGAGACTTGTCATGTTCTTGGTTCGATTAGGCTTTTTGTTACGCAGGTTGAGCCGGATCTGGAGCCGAGTTATGATGACGGTGTGATGGGGGTGCAGGATGGTGGGAAGCGGATACGGAATGGGGGTGAGGGGAAAGGGATGAGTGCTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGGTTTGATTCGGATGCGTATTTGGATATTCATGGGATTGGGATGAAGCTGTATTCGGAGGCGATGGAGGATGCGGTGACAACAGAGGGTGCTCAGGAGCTGTTTGAGATTGCGGCAGAGAGGTTTCAGGAGATGGCGGCATTGGCTTTGTTTAATTGGGGGAGTGTTCACATGTCTAAGGCGAGGAGGCGAGTGTCCTTTCCTGAGGAAGGGTCGTTTGAGAGTATTACGGCTGCCTTTGAGTGGGCTCAGAAGGAGTACGTGAATGCAGGGAGGAGGTTTGAAGAGTCTGTGAAGATCAAACCGAATTTTTATGAAGGGCTTCTTGCTCTTGGGCATCAACAGTTTGAGCAAGCAAGGCTCTGCTGGTGTTATTTGATTGCATGCGAGAAGGATTTGGAAGCTGGCCCTTCTGATGAGATTCTGCAGCTGTATAACCAGTCGGAGGACAGCATGGAGAAGGGCATGTTGATGTGGGAGGAGATTGAGGAGCGGCGCTTGAATGGACTGTCCAAATCGGATAAATATAAAGAGCAGTTAGAGAAAATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTGCTGAGGAAGCTGAGGAGCAGGCTGCGAGGATGAGGTTGCAAATATATCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAGGAATGTTTGGAGGTTTCAGTTGAAAAATTTGAACTGGCTGGAGCTTCTTCAACTGACATTGGGGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCGTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCGTTGTTTCGTCGGCGTGCTTCTTCATTCTATTCCAAGACAGGTAAACTATTTATATAG 2211 0.4971 MGKPTGKKKDHETPPKANGQASAASARSWDDKRTASSKALDEDTAMFINMSHELREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLRTSMAACYMQLGLGEYPRAISECNMALQVSPRYTKALLRRAKCYEALNRLDLAMRDVRVVLNWEPNNSTALEVLDSLRKTMDEKGIVVDETEIALAALQQQPEPPVARFRKVVREKMKKKKEQKGEDQGTSKNLVNLEKVKVESFKKKDTKLKDKDKDKDKDKEKEKQKEKEKEKDNKEKGIKEFVKEEKEKQKLGEKEKGVITRTVKLIYGEDIRWAQLPVNCGMRLVRDVIRDRYPGLKGVLVKYRDREGDLVTITSTAELRLAETCHVLGSIRLFVTQVEPDLEPSYDDGVMGVQDGGKRIRNGGEGKGMSAVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDAVTTEGAQELFEIAAERFQEMAALALFNWGSVHMSKARRRVSFPEEGSFESITAAFEWAQKEYVNAGRRFEESVKIKPNFYEGLLALGHQQFEQARLCWCYLIACEKDLEAGPSDEILQLYNQSEDSMEKGMLMWEEIEERRLNGLSKSDKYKEQLEKMGLHGLFRDVSAEEAEEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECLEVSVEKFELAGASSTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRASSFYSKTGKLFI 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3420g00001 736 MobiDBLite consensus disorder prediction 1 37 - -
Mupr3420g00001 736 MobiDBLite consensus disorder prediction 1 15 - -
Mupr3420g00001 736 Pfam PB1 domain 295 372 IPR000270 GO:0005515
Mupr3420g00001 736 SMART tpr_5 51 84 IPR019734 GO:0005515
Mupr3420g00001 736 SMART tpr_5 125 158 IPR019734 GO:0005515
Mupr3420g00001 736 SMART tpr_5 89 124 IPR019734 GO:0005515
Mupr3420g00001 736 SUPERFAMILY CAD & PB1 domains 295 380 - -
Mupr3420g00001 736 CDD PB1 297 371 - -
Mupr3420g00001 736 ProSiteProfiles TPR repeat profile. 51 84 IPR019734 GO:0005515
Mupr3420g00001 736 PANTHER PROTEIN CLMP1 1 730 IPR044517 -
Mupr3420g00001 736 Coils Coil 243 272 - -
Mupr3420g00001 736 Gene3D Tetratricopeptide repeat domain 48 176 IPR011990 GO:0005515
Mupr3420g00001 736 ProSiteProfiles PB1 domain profile. 295 373 IPR000270 GO:0005515
Mupr3420g00001 736 SUPERFAMILY TPR-like 46 170 IPR011990 GO:0005515
Mupr3420g00001 736 SMART PB1_new 295 373 IPR000270 GO:0005515
Mupr3420g00001 736 MobiDBLite consensus disorder prediction 240 269 - -
Mupr3420g00001 736 Gene3D - 295 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3420g00001 Mupr-Chr3420 11555 15367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3420g00001 41 158 Calmodulin-binding Proteins AT3G25230 30.709 1.54e-08 56.2