Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3417g00001 ATGCGTAATATATTGGAGCCCAAAACAGTAATTGGGTTTCCATGGACTTATCGGACTGGGTCATATTATACGAGAACCAAGGTTTACGAGTTGAGGAAAAAGACAAAGGCAGAGATTCTGAACCAATTGAAGGATCTGAAAGCAGAGCTTGCCCTCCTCCGTGTCGCCAAGGTCACTGGCGGAGCTCCAAACAAGCTCTCGAAGATAAAAGTGGTTCGGCTTTCGATAGCGCAGGTGCTGACTGTAATTTCTCAGAAGCAAAAAGCAGCGCTGAGAGAAGCTTACAAGAATAAGAAGTACTTGCCTTTGGATCTGCGTCCCAAGAAGACCAGAGCTATCAGAAGACGCCTCACCAAGCACCAGGAATCTTTGAAGACAGAGCACCAAAAGAAGAAGGAAATGTACTTTCCAATTAGAAAATATGCATTAAAGGTCTATTTTTGTTCTCTTCCACTTTTAACTATTATCAATGGAATAGAATTATAA 486 0.4218 MRNILEPKTVIGFPWTYRTGSYYTRTKVYELRKKTKAEILNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQESLKTEHQKKKEMYFPIRKYALKVYFCSLPLLTIINGIEL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3417g00001 161 NCBIfam 50S ribosomal protein L29 30 86 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mupr3417g00001 161 Pfam Ribosomal L29 protein 30 86 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mupr3417g00001 161 Gene3D - 100 145 - -
Mupr3417g00001 161 Hamap 50S ribosomal protein L29 [rpmC]. 26 86 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mupr3417g00001 161 PANTHER 60S RIBOSOMAL PROTEIN L35 24 145 IPR045059 GO:0000463|GO:0022625
Mupr3417g00001 161 FunFam 60S ribosomal protein L35 100 145 - -
Mupr3417g00001 161 FunFam 60S ribosomal protein L35 23 99 - -
Mupr3417g00001 161 Coils Coil 29 56 - -
Mupr3417g00001 161 CDD Ribosomal_L29_HIP 30 86 - -
Mupr3417g00001 161 Gene3D - 23 99 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mupr3417g00001 161 SUPERFAMILY Ribosomal protein L29 (L29p) 26 87 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3417g00001 Mupr-Chr3417 5964 7985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3417g00001 24 145 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 85.246 2.22e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3417g00001 K02918 - gmx:100778013 215.698