Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3412g00001 ATGGGAAAGAAGAACAAAGTGAAGGAAAATGGAGGCAAAGAGCATTGCGCCTCAACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGCTGGAGGAGACGTTCAGTGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCACACAGAAGGGGTCAGCCCAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAAGAAGATGCTAACCGTGCTATTGAGCAGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCCGTGAAGAACGGAAATCAAAACCAAATCAAGTGGACAAGACGGATGATCTCATGAAGCCAAAAGATGATGATGAAGATGGCAGATCATCTGGAGCAGAGAAGCATGTTTCAGTTTTAAAGGAAGAAGAAGTACAAGTCACAACTAAACAAAAAAACTCAAGGAAACCCATGGAAACAAAAAAATCAGCTCTTTGTAATGATGTAGCAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATGCTGACATGGCTGAAGAAGTTCACCGCCAAGCCAGAGAGGTTGGCACTGTGTGCTCTATTAAGTACCCTCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCATGCAAGATGGCTGTACTATGGATGCTTCTTCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAATGTTACATAAAAAAGAGATAGGAGGGGGAACTATTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGCCAAAGATAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTAATTATTCCACACAAGGCAGACACAGGTCTCTCTAAGGGTTTTGCATTTGTAAAGTTCACCTGCAAGCTAGATGCGGAAAATGCCATTCAAAAGCTCAATGGATCGAAGTTTGCAAAACGACTCATAGCTGTTGACTGGGCTATTCCAAAAAAGATATTTAACAGTGATACAAATAATGCTCTTGCCTCAGAGGAAGTATGCCAAAAAACCTTCATTTTAAATCGGAACTATTTAAACAAAACATCCTTTACAACTTCTTTAGGGCACCAAAAGATGAGCGATGAGGATAGTAGTGCTACTGAGGAAGATGATAGTGATACAGACTACACTAGTAGCATGGAGGAAGAAGGTGCTCTTCCTGAAGATAATTTTGATGAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTACGTCCTCGAGCAAAGGAACATCTGTAAACAATGATTCTATGTTGTCCAAAGAAAACAAGGAGCCGAGATCTGATGAAATTGTTAAGGATGTAGATGGAAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTAAGCCTGAAATTTCCAGCAGTAGCAACTTATCAAATCCTAATGGAACAGAAGAAGATAATTTGCAGAGAACAGTTTTTATAAATAATCTTCCCTTTGAATGTGATAATAAAGAAGTGAAGCAACGATTTTCTGGATTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCCAGTTACCAAGCGACCGAAAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAACTGCCAGTGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCAAGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACTGCTGCTGAAGGGGTTTCGTCCAGTGATATGTTAAAGCGCCAACATTTGGAAAGGAAAAAGACAACAAAGCTTCAATCTCCAAACTTTCATGTTTCAAGAACTAGACTCGTGATCTACAACCTACCCAAGTCAATGAATGAGAAAAAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGCCAGATTAAACTTTTGATAGATGGAAAGAAAGGAAAGGCTGTTCAAGAACGCCATTCACGAGGAGTTGCCTTTGTTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTGCGGAAGGCGAAGCTACAATCTCAGCAGCAGGGTCCTCAAAATGACAACAATGGCATGGAAAATGACAAGCATGGCAAAGTAGAAGTTTGCACGCCTGTAAAGGACACAAAACGAAAATCTCGAGAGCATGATGAACCAGCAAAGGACACAGTACTGAATTCAAATGTTGGTGGTACAGTGACAAATGGAAAATCCTCTCAAGAACACAAATCCAAAAGACAGAAAGGTAACAATAAGAGTAAAATGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAACAATGGTGGTGCATCACATGAAGGTCAAAACACTGCCACTGCCACTGCCACTAATAGAAGAAAATCAGGAAACAAAGATGATGTGGGGTTTAGAAAAAGGAAGATGCAAAACCAAGAACAAGAAGTAGGCCAAAAGGTTTCTAAGAAAAGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTGGTAGACAAACTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGCGTGATGGAGAGAAAAAACCTTCTAAACAGCTTAGGAAATGGTTTCAATCATAG 2919 0.4101 MGKKNKVKENGGKEHCASTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIEQKNGSSVGGRKIVVKHAMPRPPREERKSKPNQVDKTDDLMKPKDDDEDGRSSGAEKHVSVLKEEEVQVTTKQKNSRKPMETKKSALCNDVADEGGCSEKQRVARTVIFGGLINADMAEEVHRQAREVGTVCSIKYPLSRKDLEQHGLMQDGCTMDASSVLYTSVKSARASVAMLHKKEIGGGTIWARQLGGEGSKTQKWKLIVRNLPFKAKDNEIRDMFSSAGYVWDVIIPHKADTGLSKGFAFVKFTCKLDAENAIQKLNGSKFAKRLIAVDWAIPKKIFNSDTNNALASEEVCQKTFILNRNYLNKTSFTTSLGHQKMSDEDSSATEEDDSDTDYTSSMEEEGALPEDNFDEEADIARKVLNNLLTSSSKGTSVNNDSMLSKENKEPRSDEIVKDVDGKASNESEKVSGVSKPEISSSSNLSNPNGTEEDNLQRTVFINNLPFECDNKEVKQRFSGFGEVEYFAPVLHPVTKRPKGTGFLKFKTVEAANTAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVQDHRNLYLAKEGLILEGTTAAEGVSSSDMLKRQHLERKKTTKLQSPNFHVSRTRLVIYNLPKSMNEKKLKKLCIDAVISRATKQKPVIRQIKLLIDGKKGKAVQERHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQGPQNDNNGMENDKHGKVEVCTPVKDTKRKSREHDEPAKDTVLNSNVGGTVTNGKSSQEHKSKRQKGNNKSKMALKENPEALSMKPKNNQNGQNNGGASHEGQNTATATATNRRKSGNKDDVGFRKRKMQNQEQEVGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQERDGEKKPSKQLRKWFQS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3412g00001 972 FunFam - 2 129 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 860 890 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 891 918 - -
Mupr3412g00001 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 460 481 - -
Mupr3412g00001 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Mupr3412g00001 972 Coils Coil 756 776 - -
Mupr3412g00001 972 Gene3D - 264 364 IPR012677 -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 446 508 - -
Mupr3412g00001 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 573 IPR000504 GO:0003723
Mupr3412g00001 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Mupr3412g00001 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Mupr3412g00001 972 CDD RRM1_RBM28_like 19 97 - -
Mupr3412g00001 972 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 972 - -
Mupr3412g00001 972 CDD RRM4_RBM28_like 665 762 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 483 508 - -
Mupr3412g00001 972 SUPERFAMILY RNA-binding domain, RBD 273 356 IPR035979 GO:0003676
Mupr3412g00001 972 Gene3D - 501 604 IPR012677 -
Mupr3412g00001 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 596 IPR000504 GO:0003723
Mupr3412g00001 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 665 773 IPR000504 GO:0003723
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 771 786 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 94 160 - -
Mupr3412g00001 972 Coils Coil 591 618 - -
Mupr3412g00001 972 SUPERFAMILY RNA-binding domain, RBD 513 684 IPR035979 GO:0003676
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 787 817 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 77 160 - -
Mupr3412g00001 972 CDD RRM3_RBM28_like 513 594 - -
Mupr3412g00001 972 FunFam RNA-binding motif protein 28 664 759 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 925 966 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 393 427 - -
Mupr3412g00001 972 Gene3D - 2 110 IPR012677 -
Mupr3412g00001 972 FunFam Putative RNA binding ribonucleoprotein 441 610 - -
Mupr3412g00001 972 CDD RRM2_RBM28_like 277 353 - -
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 771 972 - -
Mupr3412g00001 972 SUPERFAMILY RNA-binding domain, RBD 18 263 IPR035979 GO:0003676
Mupr3412g00001 972 Gene3D - 664 759 IPR012677 -
Mupr3412g00001 972 SUPERFAMILY RNA-binding domain, RBD 656 763 IPR035979 GO:0003676
Mupr3412g00001 972 SMART rrm1_1 277 350 IPR000504 GO:0003723
Mupr3412g00001 972 SMART rrm1_1 19 92 IPR000504 GO:0003723
Mupr3412g00001 972 SMART rrm1_1 666 757 IPR000504 GO:0003723
Mupr3412g00001 972 SMART rrm1_1 514 592 IPR000504 GO:0003723
Mupr3412g00001 972 MobiDBLite consensus disorder prediction 402 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3412g00001 Mupr-Chr3412 5645 14758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3412g00001 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 6.88e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3412g00001 K14573 - gmx:100794821 1517.67