Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr340g00012 | ATGTCTTTCACAGGAACTCTTGATAAATGCAATGCATGTGACAAGACTGTTTATGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAAAACTGCTTCAAATGCAGTCACTGCAAGGGGTGTCTTACGATGTGCACATACTCCTCCATGGATGGAGTTCTCTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAATTTTGCCGCAAAATCTGCTGATAAACAGAATGATCTGAATAGAATTCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCTCAAAAACAGTCTATCCTCTGGAAAAGGTGACATTGGAAGGGGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGGAGGGTGTACTCTCACACATTCAAACTATGCTGCCCTGGATGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTGCTCCAAGCTGCTGCAAACAAGAGGGCTGGTTCCGCTACACCTCCTGAACCACTTGAGGAGGCATCACATGAGGCATCACATGATGCATCACATGAGGCATCACATGAGGCATCACATGAGGAACCACATGAGGAACCACATGAGGAACCACGACCAGCATCTGAGGACCAAACAGAAGAAGAAGAAACCTCTTGA | 705 | 0.4511 | MSFTGTLDKCNACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGCLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAAKSADKQNDLNRIPSKLSSMFSGTLDKCAVCSKTVYPLEKVTLEGECYHKTCFRCAHGGCTLTHSNYAALDGVLYCRHHFQQLFMEKGNYNHVLQAAANKRAGSATPPEPLEEASHEASHDASHEASHEASHEEPHEEPHEEPRPASEDQTEEEETS | 234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr340g00012 | 234 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Mupr340g00012 | 234 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
| Mupr340g00012 | 234 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Mupr340g00012 | 234 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Mupr340g00012 | 234 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Mupr340g00012 | 234 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Mupr340g00012 | 234 | Gene3D | Cysteine Rich Protein | 5 | 98 | - | - | |
| Mupr340g00012 | 234 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Mupr340g00012 | 234 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Mupr340g00012 | 234 | Gene3D | Cysteine Rich Protein | 101 | 169 | - | - | |
| Mupr340g00012 | 234 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Mupr340g00012 | 234 | PANTHER | OS06G0237300 PROTEIN | 6 | 80 | - | - | |
| Mupr340g00012 | 234 | MobiDBLite | consensus disorder prediction | 177 | 234 | - | - | |
| Mupr340g00012 | 234 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Mupr340g00012 | 234 | MobiDBLite | consensus disorder prediction | 190 | 228 | - | - | |
| Mupr340g00012 | 234 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 170 | - | - | |
| Mupr340g00012 | 234 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Mupr340g00012 | 234 | Pfam | LIM domain | 105 | 160 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr340g00012 | Mupr-Chr340 | 77837 | 79927 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Mupr340g00012 | LIM | 8.1e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr340g00012 | - | K09377 | gmx:100305845 | 363.229 |