LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr340g00003	ATGAACAACAACAATAGAGCGAGGTACCCTCCCGGAATGGGGCTCGGGCGAGGAGGTTTTGGTCCGAATCTCAACCAGAACCCGAACCTGAACCAGAACGTTAACCAGAACCCGAACCTGAACCAGAATCATCTGTTTCAGGCTCGGCCACCGTACCAGCAGCAGCAGCCGCAGTACATGCAGAGGCATTTCGTGCAACCACCGCAGCAGCAACAGCAGTGGCTGAGAAGGGACTCCAACGCCGTCGATGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACAGAGGATGTAACGGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGAGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGATATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCTTTTTGCATTCCTTCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCCTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCACTTGAAGATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGACCTTGCTAAGAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCCGATAAGCTTTTGTCCCCAGAGTTCCAACCTTCTATAGAGCAGTTGATTCAATTTCTTCCTAGAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCCGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAGAAACCTTATGTCATCAACCTCATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAGGTCCACTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGTTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGGGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACTTATTTGCACAGGGTTGGGCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATTAAGCAGATTCCACCACAAATTGATCAGGCAATTTATTGCCGGTGA	1500	0.4233	MNNNNRARYPPGMGLGRGGFGPNLNQNPNLNQNVNQNPNLNQNHLFQARPPYQQQQPQYMQRHFVQPPQQQQQWLRRDSNAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPSLEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPRNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr340g00003	499	CDD	DEADc_DDX6	127	327	-	-
	Mupr340g00003	499	SMART	ultradead3	144	340	IPR014001	-
	Mupr340g00003	499	MobiDBLite	consensus disorder prediction	1	42	-	-
	Mupr340g00003	499	Pfam	DEAD/DEAH box helicase	150	314	IPR011545	GO:0003676\|GO:0005524
	Mupr340g00003	499	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	69	498	-	-
	Mupr340g00003	499	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	336	496	IPR001650	-
	Mupr340g00003	499	Gene3D	-	330	499	IPR027417	-
	Mupr340g00003	499	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	272	280	IPR000629	-
	Mupr340g00003	499	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	125	153	IPR014014	GO:0003724
	Mupr340g00003	499	CDD	SF2_C_DEAD	337	466	-	-
	Mupr340g00003	499	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	156	326	IPR014001	-
	Mupr340g00003	499	FunFam	ATP-dependent RNA helicase DDX6	106	329	-	-
	Mupr340g00003	499	FunFam	ATP-dependent RNA helicase DDX6	330	499	-	-
	Mupr340g00003	499	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	479	IPR027417	-
	Mupr340g00003	499	Gene3D	-	82	329	IPR027417	-
	Mupr340g00003	499	Pfam	Helicase conserved C-terminal domain	351	457	IPR001650	-
	Mupr340g00003	499	SMART	helicmild6	376	457	IPR001650	-
	Mupr340g00003	499	MobiDBLite	consensus disorder prediction	22	42	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr340g00003	Mupr-Chr340	23664	30934	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr340g00003	125	496	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	3.11e-94	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr340g00003	K12614		-	gmx:100801402	889.797