Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3394g00003 ATGGTAGGACCAGAGGCTTATAGTAAAGAAAGTGATCAACAAGAAGTTCAAGATAACTGTGGAGGGTCTAAACGATCATATGATTGCACACTTTGTAAGAAGGGCTTCAATAACGCCCGGGCTTTAGGAGACCACATGAATATCCACAGGAAAGAGAGAACCAAGGTCAAGCAAGTCACACCTATTTCTTCACCATCCAGCAACTTTACCAATAATGAAGAATCCGTGGACTCTCCTTTTGTTCCATAA 249 0.4177 MVGPEAYSKESDQQEVQDNCGGSKRSYDCTLCKKGFNNARALGDHMNIHRKERTKVKQVTPISSPSSNFTNNEESVDSPFVP 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3394g00003 82 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Mupr3394g00003 82 MobiDBLite consensus disorder prediction 58 82 - -
Mupr3394g00003 82 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Mupr3394g00003 82 MobiDBLite consensus disorder prediction 44 82 - -
Mupr3394g00003 82 Gene3D Classic Zinc Finger 6 78 - -
Mupr3394g00003 82 PANTHER OS07G0101800 PROTEIN 9 72 - -
Mupr3394g00003 82 MobiDBLite consensus disorder prediction 1 24 - -
Mupr3394g00003 82 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3394g00003 Mupr-Chr3394 12267 12515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3394g00003 4 75 C2H2 Transcription Factor Family AT2G37740 37.349 3.93e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr3394g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3394g00003 - - vun:114191365 101.293