Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3392g00003 ATGGATAGGGGTGGGGTAGAAGGCCCGGCCCAAGGCAAAATTCCCCTGGACACCGCCGAACAACAGTTATTCTACGTAGCAAAATCGTTCAATGGGAACCACTTGGTAAAGTTCCCCTGCAAGCTTGCTTTTCTAGATGCAAAAATGCCTGGGACAAGGCAGAGAGATGTAACGGCCCAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAGGTAGACTTTGATGAGGACAATGATCAAGACGATACAATGGAGGAAGAAGTTGAGTATGAAGAAGAAGAGGAGGAGGAAGAAGAGGAAGAGGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAGAGGAAGAGACCAAGCCCTCAGACGGTGAAGATGAGACAAGAGTGGCAGACACTAAGGATGAAGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTCTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGAAAAGAATCCAGTGAAGCAAAAGGTTATGCTTTTGTAACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCTAAAGATTGGACTGAAGAAGATATGAAGAAAGCTGTTGCAGAGATTGGCCCTGGAGTCATCTCTGTGGAACTGCTGAAGGACCTACAGAGTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTTTTACAATCATGCTTGTGCAGAATATTCGAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGACAGCAATGCTCCAACAGTGAGCTGGGCTGATCCAAGAAATTCTGAATCATCTGCAACCTCTCAGGCTGTCATATATGACTTACATTATGCTGATATATCAATCGAGATCATAGTTGTTGATAGGCTTGCATGGCTATACTGTTATGATTATGGGATTAAATTTCCTGTGGTAAAAGCAGTGTATGTAAAGAACCTTCCTGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCACGGGAAGATCACAAAAGTGGCTCTCCCCCCTGCTAAAGCTGGGCAAGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCGGAAAGGTCAAGTGCCATGAAGGCATTGCAGAACACAGAGAAATATGAACTTGATGGACAAACGTTGGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCGTCTGGCGCAGCAAATTCACAGAAGCCAGTTGTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGGACTATAGGTGCAGGATATGGTACTGCTGGCTTTGCACAACCACTGATGTATGGTCCTGGAGCAAATCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGCTTGGATATGTATTGCAACAACCAGGGTTTCAACAGCCTGCTCCAACAATGCCAGTATCCAGACATGGGAGGAGTGGTGGCGGTAGCTCAAGTGGTTGGAAACACAGTAATGATAATAACCGCAACCGTGGGCATGGCCGATATCATCCCTACTAA 1740 0.4511 MDRGGVEGPAQGKIPLDTAEQQLFYVAKSFNGNHLVKFPCKLAFLDAKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDEDNDQDDTMEEEVEYEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETKPSDGEDETRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRIMKGKESSEAKGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQAKHRLFIGNVPKDWTEEDMKKAVAEIGPGVISVELLKDLQSSGRNRGFAFIEFYNHACAEYSRQKMSNSNFKLDSNAPTVSWADPRNSESSATSQAVIYDLHYADISIEIIVVDRLAWLYCYDYGIKFPVVKAVYVKNLPGNITQDRLKELFEHHGKITKVALPPAKAGQEKSRFGFVHFAERSSAMKALQNTEKYELDGQTLECSLAKPQADQKSSGAANSQKPVVLPTYPPHLGYGMVGGAYGTIGAGYGTAGFAQPLMYGPGANPAGMAMMPMLLPDGRLGYVLQQPGFQQPAPTMPVSRHGRSGGGSSSGWKHSNDNNRNRGHGRYHPY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3392g00003 579 Coils Coil 89 136 - -
Mupr3392g00003 579 Gene3D - 250 330 IPR012677 -
Mupr3392g00003 579 FunFam RNA recognition motif-containing protein 75 249 - -
Mupr3392g00003 579 MobiDBLite consensus disorder prediction 51 152 - -
Mupr3392g00003 579 MobiDBLite consensus disorder prediction 551 565 - -
Mupr3392g00003 579 MobiDBLite consensus disorder prediction 54 68 - -
Mupr3392g00003 579 Gene3D - 52 249 IPR012677 -
Mupr3392g00003 579 SMART rrm2_1 170 243 IPR003954 GO:0003676
Mupr3392g00003 579 SMART rrm2_1 379 452 IPR003954 GO:0003676
Mupr3392g00003 579 SUPERFAMILY RNA-binding domain, RBD 377 462 IPR035979 GO:0003676
Mupr3392g00003 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
Mupr3392g00003 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 456 IPR000504 GO:0003723
Mupr3392g00003 579 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 250 330 - -
Mupr3392g00003 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 241 IPR000504 GO:0003723
Mupr3392g00003 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 317 IPR000504 GO:0003723
Mupr3392g00003 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 449 IPR000504 GO:0003723
Mupr3392g00003 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 331 IPR000504 GO:0003723
Mupr3392g00003 579 MobiDBLite consensus disorder prediction 77 138 - -
Mupr3392g00003 579 SMART rrm1_1 170 243 IPR000504 GO:0003723
Mupr3392g00003 579 SMART rrm1_1 379 452 IPR000504 GO:0003723
Mupr3392g00003 579 SMART rrm1_1 250 327 IPR000504 GO:0003723
Mupr3392g00003 579 MobiDBLite consensus disorder prediction 536 579 - -
Mupr3392g00003 579 CDD RRM_SF 171 243 - -
Mupr3392g00003 579 Gene3D - 373 498 IPR012677 -
Mupr3392g00003 579 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 56 558 - -
Mupr3392g00003 579 SUPERFAMILY RNA-binding domain, RBD 166 331 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3392g00003 Mupr-Chr3392 19830 26049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3392g00003 171 531 Eukaryotic Initiation Factors Gene Family AT1G71770 22.139 6.03e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3392g00003 K13161 - gmx:100798476 655.595