Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3390g00002 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAACCTGTGCCTTCAAACCCCAACTTTCATTGAGTGGCTCAAACCATCTTCCTCTCTAACTACTACTTCAACCCCATCATCTCCTTCTTCCTTGACTCAGCATGAACTTGCTCAGGAAACGATCCAGTTTTTGCCCTTCAATCATGGATTGCAAAAGGATGGTTTTGAAGTAAAAGAAGAGAAGGTGGAACAGGTAACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGGCCCTGATGATGAGGAAAAGAAGGTTTTCCATGTTAAGGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGATGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGTTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGTCACGGGTCCGAATTTAGGAAAGGACCAGACTCTCTTAAAGGAACACAACCAGCTGCAATGCTGAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAACCATCCAAGAGCAAAACCCTTGAAGGACTTCAGAACGCTTCAAACACACTACAAGAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGACTTTAAGCACAAAAGGTCCCTTAAAGACCATATTAGATCCTTTGGAAAAGGTCACTCCCCGCATCCTTCTCTTGAAGGCTTCGTGGAAGATGAGAAGGAATGCGTTACCGGGTCTGATGAAGATGAAGTTGCTCATACATGA 900 0.4389 MSFRECNVENKNLCLQTPTFIEWLKPSSSLTTTSTPSSPSSLTQHELAQETIQFLPFNHGLQKDGFEVKEEKVEQVTVALHIGLPNTGGPDDEEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFVCSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDEDEVAHT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3390g00002 299 SMART c2h2final6 136 158 IPR013087 -
Mupr3390g00002 299 SMART c2h2final6 183 215 IPR013087 -
Mupr3390g00002 299 SMART c2h2final6 220 240 IPR013087 -
Mupr3390g00002 299 Gene3D Classic Zinc Finger 135 158 - -
Mupr3390g00002 299 Pfam C2H2-type zinc finger 136 155 - -
Mupr3390g00002 299 SUPERFAMILY beta-beta-alpha zinc fingers 206 240 IPR036236 -
Mupr3390g00002 299 Gene3D Classic Zinc Finger 178 269 - -
Mupr3390g00002 299 PANTHER ZINC FINGER PROTEIN WIP2 29 286 IPR043584 GO:0003700|GO:0010468
Mupr3390g00002 299 FunFam Zinc finger protein WIP2 189 271 - -
Mupr3390g00002 299 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Mupr3390g00002 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Mupr3390g00002 299 SUPERFAMILY beta-beta-alpha zinc fingers 105 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3390g00002 Mupr-Chr3390 35329 38769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3390g00002 7 289 C2H2 Transcription Factor Family AT1G08290 56.548 2.14e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr3390g00002 zf-C2H2_6 5.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3390g00002 - - gmx:100819306 537.339