Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3390g00001 ATGTATAGCAATTTCAAGGAGCAAGCGATAGAGTACGTGAAACAGGCCGTGCAGGAAGACAATGCCGGAAACTACGCGAAAGCGTTCCCTCTGTACATGAACGCCCTGGAGTACTTCAAGACTCATCTCAAGTACGAAAAGAACCCTAAGATCAAAGAAGCCATCACCCAGAAATTCACCGAGTATCTGCGCCGGGCTGAGGAGATTCGGGCCGTCCTCGGTGACGGCGGGCCCGGCCCGGCCTCCAACGGAGATGCCGCCGTGGCCGCGCGCCCCAAGACCAAGCCCAAGGACGGCGAAGGGGGCGACGGGGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGAGAGAAGCCCAACGTGAAGTGGAACGACGTCGCGGGCTTGGAGAGCGCCAAGCAGGCTTTGCAGGAGGCTGTGATTTTGCCTGTCAAGTTCCCTCAGTTCTTTACTGGTAAAAGACGACCCTGGAGAGCTTTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCCGAGTCCACATTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTCATTGACGAAATAGATTCCCTATGTGGTCAGCGAGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCCTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGATCTGAAGGCTCGCCAACACATGTTCAAGGCAAGGGCAAATACTTGA 939 0.5122 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLGDGGPGPASNGDAAVAARPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKARANT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3390g00001 312 SMART AAA_5 162 298 IPR003593 GO:0016887
Mupr3390g00001 312 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Mupr3390g00001 312 MobiDBLite consensus disorder prediction 73 109 - -
Mupr3390g00001 312 PANTHER AAA DOMAIN-CONTAINING 15 308 - -
Mupr3390g00001 312 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Mupr3390g00001 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 311 IPR027417 -
Mupr3390g00001 312 Gene3D - 6 74 - -
Mupr3390g00001 312 Gene3D - 100 311 IPR027417 -
Mupr3390g00001 312 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Mupr3390g00001 312 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Mupr3390g00001 312 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Mupr3390g00001 312 CDD MIT_VPS4 4 77 IPR045253 -
Mupr3390g00001 312 CDD RecA-like_VPS4 124 294 - -
Mupr3390g00001 312 SMART smart 2 79 IPR007330 -
Mupr3390g00001 312 MobiDBLite consensus disorder prediction 91 109 - -
Mupr3390g00001 312 SUPERFAMILY MIT domain 2 80 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3390g00001 Mupr-Chr3390 5714 11347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3390g00001 105 307 Calmodulin-binding Proteins AT3G56690 44.076 1.52e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3390g00001 K12196 - gmx:100788150 582.793