Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3322g00001 ATGTGCGGTGTTTCCAAGGGTAAGCCTTCTCAACTTGGTTTGGTTATGGAGGATGAGTATGGAAAAGAAGGGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCGGCTGCGGATGATCTAATTGGCTTCAAAGACGCTGTCGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGTTGGCTCAAAGAGATTTGGTTATGAAGAGAGGACACCTTTAATGGTTGCTTCCATGTTTGGAAGCCTTGGTGTATTGGGTTATATTCTTGGAACGGGTCGTGTTGATGTTAACCAGGCTAGTATGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCCGCCTCCGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTACTGCTGTTGATGCCAATGGTAACCGGCCCCTTGACTTGATTGTCTCTGTGCCTAATTCTATCTTCAATCCAAGGATAAGGATTCTGCAGGCCCTCCTGGAGGGTACAGATGCTGCTGATCAGGTATGTTTCATGCTTCCGGAAGTCATTGACCAAATTGAGGAACAAAGGCAAGACATGAGCATGCCTCGAGTTTGGAAAGATGGGACTGAGAAGAAAGATTATCCTATTGATCTCTCTCTTCCCGACATAAAGAATGGGATATATAGTACTGATGAGTTTAGGATGTATTCATTCAAAGTGAAGCCTTGTTCAAGGGCGTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGAGACGTGATCCAAGGAAATATCATTACAGCTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCTTGCAGCAAGGGCGATGCCTGCGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCGCAATACCGTACTAGGCTCTGCAAGGATGAGAGTGGATGCTCAAGGAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCCAGGTCATATTCTGCTAGTGCTTCTGCATTGGAGATGGGGACGGTTAGTCCAATTGCACTTGGTTCTCCATCTGTTATGATACCACCTGCCTCAACACCACCTTTGACTCCATCCGGGGCATCTTCTCCGGTTGCTGGATCCATGTGGTCTCAATCTAATGTCTCAGTCCCCACCCTCCAGCTGCCTAAAAGCAGATTGAAGACTGCATCAACTGCAAGGGACATGGATTTAGATATTGAGCTGCATGGACTTGAAACTCACCGACGTAGACAGCAGCTAATGATGGATGAGATATCCGGTCTTTCCTCTCCTTCCAACTGGAAAAACTCCATGCCTAATAGTCCATCTTTTCGTGTTTCGTTGAGTGATCACAATGGGGACTTAAATAGGCTTTCAGGGGTGAAGCCTTCTAACTTCGAAGACATCTATGGATCGCTAGATCCATCTATGTTGTCTAAATTCCATGGAATGTCACTTGATACTGCAGGACCTCAGTTACAATCTCCAACCGGAATCCAGATGTGCCAGAACATGAACCAGCAGCTAGGAGGAGGCTATTCTTCCAGCCTTTCTGGATCGCGGTCCTTTAGGGTTGATCCATCGGGCGAAGCAGCATTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGGAGCCAGAGCTTTATTGAGCGCAGTGTGGCGAAGCATCATTCTGAGCTTACTTCTTCAAAGCCCTTCTCTAACTGGGGCTCACCTAATGGAAAACTAGATTGGACCATAAATGGAGAAGAACTGAATAAGCTGAGAAAATCTTCTTCCTTTGGAATTAGAAGCAGCAACAATCCTCTAACAAATGCTTCAACCAAAGTGCAGGCAAATGTTGATGATGAGCCAGACGTGTCATGGGTTCACTCGCTTGTGAAGGATGCTCCGCCGGAATCTGGTGAATATAGCGTCGAAGATCTGCGCAAGAAGCTGCAATGCCACAACGGAACTGACGCGATTCCAGCATGGCTGGAGCAACTGTACTCGGAGCAGGAGCAGATGGTGGCGTGA 2073 0.4747 MCGVSKGKPSQLGLVMEDEYGKEGMHHRISALLEFSAADDLIGFKDAVEKEGHDVDGVGLWYGRRVGSKRFGYEERTPLMVASMFGSLGVLGYILGTGRVDVNQASMSDGATALHCAVAGGSAASVEVVKLLLDASADVTAVDANGNRPLDLIVSVPNSIFNPRIRILQALLEGTDAADQVCFMLPEVIDQIEEQRQDMSMPRVWKDGTEKKDYPIDLSLPDIKNGIYSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCSRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASASALEMGTVSPIALGSPSVMIPPASTPPLTPSGASSPVAGSMWSQSNVSVPTLQLPKSRLKTASTARDMDLDIELHGLETHRRRQQLMMDEISGLSSPSNWKNSMPNSPSFRVSLSDHNGDLNRLSGVKPSNFEDIYGSLDPSMLSKFHGMSLDTAGPQLQSPTGIQMCQNMNQQLGGGYSSSLSGSRSFRVDPSGEAALNPRAAAFAKRSQSFIERSVAKHHSELTSSKPFSNWGSPNGKLDWTINGEELNKLRKSSSFGIRSSNNPLTNASTKVQANVDDEPDVSWVHSLVKDAPPESGEYSVEDLRKKLQCHNGTDAIPAWLEQLYSEQEQMVA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3322g00001 690 SUPERFAMILY Ankyrin repeat 71 154 IPR036770 -
Mupr3322g00001 690 PANTHER UNKEMPT FAMILY MEMBER 34 649 IPR045234 -
Mupr3322g00001 690 SMART ANK_2a 109 141 IPR002110 GO:0005515
Mupr3322g00001 690 SMART ANK_2a 74 104 IPR002110 GO:0005515
Mupr3322g00001 690 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Mupr3322g00001 690 Gene3D - 30 161 IPR036770 -
Mupr3322g00001 690 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Mupr3322g00001 690 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Mupr3322g00001 690 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Mupr3322g00001 690 Pfam Ankyrin repeats (3 copies) 69 143 IPR002110 GO:0005515
Mupr3322g00001 690 Gene3D - 273 335 - -
Mupr3322g00001 690 Coils Coil 678 690 - -
Mupr3322g00001 690 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Mupr3322g00001 690 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Mupr3322g00001 690 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3322g00001 Mupr-Chr3322 2396 4468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3322g00001 1 682 C2H2 Transcription Factor Family AT5G12850 37.913 1.35e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr3322g00001 Ank_2 2e-06 CL0465