LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr3304g00002	ATGGGGGCGAAGAAGCAAAGCCAGGTAGTGAAAAGTGAGGGTAATGGCACCAACGATGTTTTTGCTTCGTGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTATGTGACCAACTCCGTGAAAGGTTGGGCTTTGAAGTTCCGACGCTGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCGGGACGTCATGCACTGGTAAATGCTGCCACCGGCACGGGGAAGACTGTTGCTTATCTGGCTCCAATCATTCATCGCTTGCAGAGTTATGATAATCGGATTCAACGCACTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATCATGGGTGGTGAAAATAGGTCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCATGTACTCAAATCTGGGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAGAAAAAGGCATGATGACCCAGAGAATACAGTTCCAAGACACACTAAAATTCAAAGACAAAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGTTGATTGGTCTTGATGGTAAGAAAATAGAACCAATTTCAACAATTGAAAGCCTTGATCCTTCAGAATCTGATGAAGACAATGAAGACAAGTATTCCAATAAAATACTAACAGTTGGAGATTACAAAGTCCCTACACAATTGGTTCAGAGATATGTGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCGATTCTAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGATCCGACAGATCTTTCTCGGATGCAAAACTTTTCGGTTACATGGTAATATGGAACAGGCAGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCTCTGATGTTTCTGCCAGGGGCTTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACAGAATATGTTCATAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAATTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACAGAGTATCCTGTCCTCAAAATGTTGGATAATTTTCCACTATATGGACAAAAGAACCTCATGAAAAAGTCTGTTTTCTTAGATTCACATCCCTGGGTCCTTGGTCTCCAGAAGGCACTTGAAGCCTTCATCACTTCCAAGCCCAAGGTAGATGAACTTGCCAAAAAGGCATTTTGCTCTTGGGTTCGGGCATACACAGCCCACCGCGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCATCCTTAGTTGGAAAGTCATTCCAAAAGCAAACTCAGAAGAGAAAGAGAAATGAGAAGAAAAATGGGTTGTCAAAAAGGAGAAAAGTTGCGAGTATTTTGCTGTCAATTTCTCGAAATTCACCAGAAACAGAGTTATGTCACTAG	1824	0.4101	MGAKKQSQVVKSEGNGTNDVFASCSFSSLGLDSNLCDQLRERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHRLQSYDNRIQRTDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFMYSNLGWIIFDEADRILELGFGKDIEEILDLLGSRRKRHDDPENTVPRHTKIQRQNLLLSATLNEKVNHLAKISLDNPVLIGLDGKKIEPISTIESLDPSESDEDNEDKYSNKILTVGDYKVPTQLVQRYVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGIRQIFLGCKTFRLHGNMEQADRRTSFQAFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPIEIDYLQDLEKHGVSLTEYPVLKMLDNFPLYGQKNLMKKSVFLDSHPWVLGLQKALEAFITSKPKVDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGKSFQKQTQKRKRNEKKNGLSKRRKVASILLSISRNSPETELCH	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr3304g00002	607	SMART	DUF4217_3	499	564	IPR025313	-
	Mupr3304g00002	607	Pfam	DEAD/DEAH box helicase	50	240	IPR011545	GO:0003676\|GO:0005524
	Mupr3304g00002	607	PANTHER	RNA HELICASE	23	569	-	-
	Mupr3304g00002	607	SMART	helicmild6	355	437	IPR001650	-
	Mupr3304g00002	607	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	56	252	IPR014001	-
	Mupr3304g00002	607	Pfam	Helicase conserved C-terminal domain	315	437	IPR001650	-
	Mupr3304g00002	607	SMART	ultradead3	44	265	IPR014001	-
	Mupr3304g00002	607	Gene3D	-	308	590	IPR027417	-
	Mupr3304g00002	607	CDD	SF2_C_DEAD	297	446	-	-
	Mupr3304g00002	607	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	296	484	IPR001650	-
	Mupr3304g00002	607	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	24	53	IPR014014	GO:0003724
	Mupr3304g00002	607	CDD	DEADc_DDX31	35	253	-	-
	Mupr3304g00002	607	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	180	188	IPR000629	-
	Mupr3304g00002	607	Pfam	Domain of unknown function (DUF4217)	501	561	IPR025313	-
	Mupr3304g00002	607	Gene3D	-	2	255	IPR027417	-
	Mupr3304g00002	607	MobiDBLite	consensus disorder prediction	569	583	-	-
	Mupr3304g00002	607	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	99	458	IPR027417	-
	Mupr3304g00002	607	MobiDBLite	consensus disorder prediction	565	586	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr3304g00002	Mupr-Chr3304	4599	13203	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr3304g00002	17	469	Eukaryotic Initiation Factors Gene Family	AT3G19760	24.615	8.03e-33	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr3304g00002	K14806		-	gmx:100805157	1055.43