Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr32g00026 ATGAAAGGAATATCCTATCGAGGTAATCTTATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAGCCCGCTTGGATAACATCTAGACAAATAGAAGCGGGACGGCGGGCAATGTCACGAAATGTTCGCCGAGGTGGACAAATATGGGTACGCATATTTCCAGACAAACCGGTTACAGTAAGACCTACTGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCTGGGAAAATACTTTATGAAATGGGCGGAAAAGGCTATTTCAATAGCAGCATCCAAAATGCCTATACGAACTCAATTCATTATTTCTGGATAATAATTAGAACCAAAGGAAAGAACGGAGCACGCGAACTGATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAGAAGCAGTACCAAATACGAACTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATAATAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGCGCAATCGCCAGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGCATACTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTGTTACAGATGTACGAGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGGACGCCTTTTGGCGCTCAAACCGCAGCAGGAAATGCTATTCGAACAGTAGCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCAGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCCAAGCCGATACAATAGGCATTGCAATGCGAAGAGTTTTACTCGGAGAAATAGAGGGAACATGTATCACACGCGCAAAATCGGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCAGGACGCGTCTATTTGTTTCAAAGGTCCTGGATATGTAACCGCTCAAGACATCATTTTACCACCCTCTGTGGAAATCGTTGATAATACACAACATATAGCCAACGTAACAGAATCTGTTAATTTGTGTATTGGATTACAAATCGAGAGGAATCGTGGGTATCGTATAAAAACACTAAAAAACTTTCAAGACGGAAGTTATCCTATAGATGCTGTATTCATGCCTGTTCGAAATGTAAATCATAGTATTCATTCTTATGTGAATGGAAATGGAAATGAAAAACAAGAAATACTCTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAGGAAGCGCTTTATGAAGCCTCCCGGAATTTGATTGATTTATTTATTCCCTTTTTACATGCAGAAGAAGATAACTTTAATTTAGAAAACAATCAACACAAAGTTACTTTGCCCCTTTTTACTTTTCATGATATATTGGCTAAGGTTAAACTAAGGAAAAATAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTCAAAAGATCCAATATTCATACATTATTAGAACTTTTGAATAACAGTCAAGAAGACCTTACGAAAATGTTACATTTTCGCGTAGAAGATGTAAAATATATATTGGACATTTTAGAAATAGAAAAGCATTTTGCATAA 1848 0.3761 MKGISYRGNLICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGKGYFNSSIQNAYTNSIHYFWIIIRTKGKNGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNTNLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEHTRKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFGAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTESVNLCIGLQIERNRGYRIKTLKNFQDGSYPIDAVFMPVRNVNHSIHSYVNGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKVKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEDLTKMLHFRVEDVKYILDILEIEKHFA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr32g00026 615 Hamap 50S ribosomal protein L14 [rplN]. 99 232 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 320 507 IPR011263 GO:0003899|GO:0006351
Mupr32g00026 615 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 547 609 IPR011260 GO:0003677|GO:0003899|GO:0006351
Mupr32g00026 615 SUPERFAMILY RBP11-like subunits of RNA polymerase 320 513 IPR036603 GO:0006351|GO:0046983
Mupr32g00026 615 Gene3D - 553 613 - -
Mupr32g00026 615 CDD RNAP_alpha_NTD 320 511 - -
Mupr32g00026 615 Gene3D Ribosomal protein L14 116 224 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 SUPERFAMILY Ribosomal protein L16p/L10e 1 94 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 NCBIfam DNA-directed RNA polymerase subunit alpha 319 609 IPR011773 GO:0003677|GO:0003899|GO:0006351
Mupr32g00026 615 Hamap 30S ribosomal protein S11 [rpsK]. 211 349 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Pfam Ribosomal protein L14p/L23e 121 227 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 SMART Ribosomal_L14_2 114 229 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 FunFam Ribosomal protein L14 162 229 - -
Mupr32g00026 615 Gene3D Ribosomal protein S11 225 337 IPR036967 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 NCBIfam 50S ribosomal protein L16 1 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 339 457 IPR036643 -
Mupr32g00026 615 FunFam DNA-directed RNA polymerase subunit alpha 339 456 - -
Mupr32g00026 615 CDD Ribosomal_L16_L10e 7 97 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Pfam Ribosomal protein L16p/L10e 2 95 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Pfam RNA polymerase Rpb3/RpoA insert domain 346 438 IPR011262 GO:0003899|GO:0006351|GO:0046983
Mupr32g00026 615 ProSitePatterns Ribosomal protein L14 signature. 167 193 IPR019972 -
Mupr32g00026 615 SUPERFAMILY Translational machinery components 230 320 - -
Mupr32g00026 615 PANTHER 50S/60S RIBOSOMAL PROTEIN L16 1 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 SMART rpoldneu2 310 514 IPR011263 GO:0003899|GO:0006351
Mupr32g00026 615 SUPERFAMILY Ribosomal protein L14 120 227 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Gene3D Ribosomal protein L10e/L16 1 115 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 Gene3D - 339 456 IPR036643 -
Mupr32g00026 615 Pfam Ribosomal protein S11 235 321 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mupr32g00026 615 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 552 609 - -
Mupr32g00026 615 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mupr32g00026 615 NCBIfam 50S ribosomal protein L14 121 227 IPR005745 GO:0003735|GO:0006412|GO:0015934
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr32g00026 122 225 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 34.259 7.29e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr32g00026 K03040 - qsa:O6P43_035150 673.7