Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3277g00001 ATGTTAGACAACAGTGCTTCTTCAGGTGCACCGTCTTCATCCGATGCCGCCTTTGCATTATCCGAAAATGGGGTTGCTAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCGACGACCCTGCTGGAATCGGACAGATACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCATGGAAATTGCTAAAGAGGGAAACGCAAGGGCAGAAGAAGAGGGTGTTTGTGTGTCCGGAGCCAAGTTGCTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATAAAGAAGCACTTCAGGAGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGCTATGCAGTTCAATCCGACTACAAAGCCCACATCAAAACCTGTGGCACCCGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGACCAGAGTTACAAGCACTGCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACTGCAAGGACTTCCACTGCCAAAACCAGCTGAACAACCAGCAACAACTGTCTTATTAACTTCAGAGACACACAATAACAAGTCCACCACCTCGCATAACTTAGAACTTCAGCTCTTACCCTCCTCAACAAACTCTCAAGAAACACGAAATCCGAAGGAAAACTATGGTTTGAAGCTTTCAATAGGCTCATGTGGTAACGACAAAGGGAATGAACCAGAGAGAGCGTGTTCAGAATCACATAGGAACCCGCCCGAAAGGAATAATGCCATTGACTATTCTACATTGGAAGTGGCGAGGTTGAAAGAGTTTGCAGGAGAGGAACTCAAGTTGGCCATGGCAGAAAAGAGTTATGCAGAAGAGGCCAGAAGAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAAGATAAGGAAACAAGCACAAGCTGAACTTGCAAAGGCTGATGAGCTGAGAAAGCAAGCTATCAAGAAGATAAGTTCCACTGTTATGGAAATAACATGCCAAACTTGCAAGCAACAGTTCCAGTCTTCAACTGTAGGGGTTCCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1284 0.4798 MLDNSASSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPLQGLPLPKPAEQPATTVLLTSETHNNKSTTSHNLELQLLPSSTNSQETRNPKENYGLKLSIGSCGNDKGNEPERACSESHRNPPERNNAIDYSTLEVARLKEFAGEELKLAMAEKSYAEEARREAKRQIEIAELEFENAKKIRKQAQAELAKADELRKQAIKKISSTVMEITCQTCKQQFQSSTVGVPSEETSIVMSYMSSATTEGEAE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3277g00001 427 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Mupr3277g00001 427 MobiDBLite consensus disorder prediction 1 20 - -
Mupr3277g00001 427 MobiDBLite consensus disorder prediction 241 306 - -
Mupr3277g00001 427 Gene3D Classic Zinc Finger 35 100 - -
Mupr3277g00001 427 MobiDBLite consensus disorder prediction 289 303 - -
Mupr3277g00001 427 Gene3D Classic Zinc Finger 119 196 - -
Mupr3277g00001 427 SMART c2h2final6 98 128 IPR013087 -
Mupr3277g00001 427 SMART c2h2final6 134 161 IPR013087 -
Mupr3277g00001 427 SMART c2h2final6 57 79 IPR013087 -
Mupr3277g00001 427 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Mupr3277g00001 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Mupr3277g00001 427 FunFam protein indeterminate-domain 12-like 36 104 - -
Mupr3277g00001 427 MobiDBLite consensus disorder prediction 1 45 - -
Mupr3277g00001 427 Coils Coil 326 381 - -
Mupr3277g00001 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 395 IPR031140 -
Mupr3277g00001 427 MobiDBLite consensus disorder prediction 241 271 - -
Mupr3277g00001 427 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3277g00001 Mupr-Chr3277 2217 4403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3277g00001 22 427 C2H2 Transcription Factor Family AT2G01940 57.432 5.26e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr3277g00001 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3277g00001 K25871 - gmx:100806138 756.518