Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3244g00004 ATGGGTTTCCATGCGGAGGCAAAGGCCACGATACATCAACCTTGCGCAGCTTGCAGGACGTTACGCCGCAGATGTGACTATAAGTGTCTACTTGCTCCATATTTCCCAACTCATGAGCTTGAGAAATTTGTTGGAGTCCATAAAGTGTTCGGTGCTAGCAACGTTATCAGAATGATTCAGATGGTGGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCCATGGTGTACGAGGCGAAGGAAAGGCTTAGAGATCCAGTTTATGGCAGTGCTGGAGCAATTTACCAGTTACAAAAGATGATTCAGGAACTAAAAGCAGAACTGGAGTCGATGAAAAGTCAGGTATCAGAGCTGTGTGAACAAAAAGACCAGTTGTTAAGCATTTATAACAACAACACTCATGGCCACCTTGATCCTTTATTTCCCCCTACCTTTCATGCTTATGCTTCTTTGTCGCCAGACTTTGATCATCCCATGGCCTCAGATCCATTACAAGGTTGCTCGGTGTACAGCAATATTAATAAGTTTTGA 528 0.4375 MGFHAEAKATIHQPCAACRTLRRRCDYKCLLAPYFPTHELEKFVGVHKVFGASNVIRMIQMVEETKREDAVKAMVYEAKERLRDPVYGSAGAIYQLQKMIQELKAELESMKSQVSELCEQKDQLLSIYNNNTHGHLDPLFPPTFHAYASLSPDFDHPMASDPLQGCSVYSNINKF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3244g00004 175 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Mupr3244g00004 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 119 - -
Mupr3244g00004 175 Coils Coil 93 120 - -
Mupr3244g00004 175 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Mupr3244g00004 175 SUPERFAMILY Spectrin repeat 71 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3244g00004 Mupr-Chr3244 38890 39814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3244g00004 10 129 AS2 family AT1G07900 51.240 1.11e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mupr3244g00004 LOB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3244g00004 - - ccaj:109796546 244.973