Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3240g00002 ATGGCCGGCGAACTCGCCGGAGACCACACGCCGGAGCTCCTATGTCTGGTTCACGACATCGCCGGAATGTGCGCGGGGTCATCCTCCGGCGCGGCCATTGCGGCCGACGCCATGTTCCGGAAGGACTGCACCGATCTGGTTCGACGGATCTCCCTCCTAACGCACCTTTTCGAGGAGATTAAGGAACTCAACGACAACGTGGTCGATGCCGCTTCCTCCTCTTCGGCTTCCGCGTCTTCCTGGTCCTCCGATCTGGTCCTTGCTCTTCACTCCGCTCGACGCTTGCTTTCCGTTGCTAGAAACTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCCAAGACCATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACAGTTTAGACATCTCAGAAGAAGTAAAAGAGCAGGTGGATTTGGTGAGAACGCAATTGAGACGAGCCACAGATAAATATGGGTATATGATTTCAAAGATGCCATCTTATGAACTATCCCAGCCGCTGGCTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAATGGGTTGTACAAACAACACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTAAAATCAATGGAGAGAAAAGTTGCAGCACACATCGGGCAGGACCTCGCTTGGAAAGAGCAAGGAGCATCCCTGTTTCTTCTGAAGTTTCCATAATGATTGCAACTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAGAGCCTACCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTCTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACCGGTCAGACATACGAGAGATCTTACATTCAGAGATGGATAGATGGTGGAAATGCAACCTGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGTCTAACTAATGGGAAATTAAAGAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATTGCAGCAATCGAAGCTCTGGTCCGGAAGCTCTCCAGCCGGTCCATTGAGGAGCGTAGATCAGCTGTTACTGAAATTCGATCACTGTCCAAACGAAGTACTGATAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACTCAAGACAATGCAGTTACTTCAATTCTCAATCTCTCCATATATGAAAACAACAAGGGTCTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCTAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATAATCGGTGCCTCGGGAGCTATACCGGCTTTGGTAGAATTGCTCCAAAATGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACTGCATTGTTCAACTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGTCACCAAGAGGCAAAAGTTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGAACAGGATTGCCTCGGAACAAAGAGAATGCAGCTGCTATTTTACTTGCATTGTGCAAGAGGGATGCAGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTCTCTGAACTTGCTCAAAGTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTGTTGGAGCATCTTCGCAAGTTGCAGCAACTTTGA 1947 0.4597 MAGELAGDHTPELLCLVHDIAGMCAGSSSGAAIAADAMFRKDCTDLVRRISLLTHLFEEIKELNDNVVDAASSSSASASSWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDSLDISEEVKEQVDLVRTQLRRATDKYGYMISKMPSYELSQPLAEEISQVLGKSVNGLYKQHSCPENLSELDSIPKINGEKSCSTHRAGPRLERARSIPVSSEVSIMIATDPESQEISETKSLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNATCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVRKLSSRSIEERRSAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELAQSGTERAKRKATSLLEHLRKLQQL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3240g00002 648 Coils Coil 628 648 - -
Mupr3240g00002 648 SUPERFAMILY ARM repeat 368 642 IPR016024 -
Mupr3240g00002 648 FunFam RING-type E3 ubiquitin transferase 548 647 - -
Mupr3240g00002 648 Gene3D - 347 442 IPR011989 -
Mupr3240g00002 648 Gene3D - 443 549 IPR011989 -
Mupr3240g00002 648 Coils Coil 141 161 - -
Mupr3240g00002 648 Gene3D - 550 647 IPR011989 -
Mupr3240g00002 648 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Mupr3240g00002 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 533 IPR000225 GO:0005515
Mupr3240g00002 648 PANTHER U BOX DOMAIN-CONTAINING 38 644 - -
Mupr3240g00002 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Mupr3240g00002 648 SUPERFAMILY RING/U-box 268 343 - -
Mupr3240g00002 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Mupr3240g00002 648 FunFam RING-type E3 ubiquitin transferase 268 343 - -
Mupr3240g00002 648 CDD RING-Ubox_PUB 270 322 IPR045210 -
Mupr3240g00002 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Mupr3240g00002 648 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Mupr3240g00002 648 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Mupr3240g00002 648 SMART arm_5 439 479 IPR000225 GO:0005515
Mupr3240g00002 648 SMART arm_5 398 438 IPR000225 GO:0005515
Mupr3240g00002 648 SMART arm_5 521 561 IPR000225 GO:0005515
Mupr3240g00002 648 SMART arm_5 480 520 IPR000225 GO:0005515
Mupr3240g00002 648 SMART arm_5 562 602 IPR000225 GO:0005515
Mupr3240g00002 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 574 IPR000225 GO:0005515
Mupr3240g00002 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Mupr3240g00002 648 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Mupr3240g00002 648 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Mupr3240g00002 648 FunFam RING-type E3 ubiquitin transferase 347 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3240g00002 Mupr-Chr3240 17595 20538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3240g00002 37 647 U-box Gene Family AT1G23030 63.813 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3240g00002 - - gmx:100815448 1096.65