Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3230g00006 ATGAATTCCGAGGCGCAACACGGAACGGCGTCGTATTGGTGCTATAGTTGCACGCGCTTCGTGCACCTCTCCGTTCAAACCACCATAGCCTGCCCTAACTGCCAAAGCGACTTCGTCGAAGAGATCCGCGCCGATACGTCGCCGCGCCACCGTCTCAGCCCCTTCCCCGACGACCCCCTCTCCCTCCGCCGGCAGGGATTCCGCCGCCGCCGCCGAGACGCCGGCAATCGCTCCCCTTTCAACCCCGTCATCGTCCTCCGCGGCCCCGGCGACGATGCCGCCGACCACGACGGCGCCAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGTTCCGGCCTCCGGCCTCTGCCGCCCACCATGTCGGAGTTCCTCCTCGGGTCGGGCTTTGACCGCCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGGCGCCCGGAGAATCCGCCGGCGTCGAAGGCGGCGATCGAATCGATGCCGACGGTCGAGATTGGAGAGGCGCAAGTCGAGACCGACACGCACTGCGCCGTTTGCAAAGAGGCGTTTGAGCTGCACGCGGAGGCGCGTGAGTTGCCGTGCAAGCACATTTACCACCCCGATTGCATTCTCCCGTGGCTCGCGATGCGGAACTCGTGCCCAGTGTGTCGCCACGAGCTTCCTTCGGATTTGGAAACTAGGGTTCCGAGTCAGATCGACGAAGAATCGATAGGGTTAACGATTTGGAGGCTTCCCGGCGGGGGGTTCGCCGTGGGGCGATTTTCCGGCAGCAGGAGGGCCGGCGAGAACCACTTCCCGGTGGTGTACACAGAGATGGATGGTGGCCTGAACACAAACGGTGCTCCGAGGAGAATTTCTCGGTCGGTGAGGAACAATAGGGTTAGGGAAAGTCGCGGATTTGGTAGGGTTATTCGCAATTTCTTCTCATTCTTTGGAAGACTTGGTAACGGTTCTAGAAACTCTTCTTCTTCGTCGTCTTTATCGTCTTCTTATTCTAGTTCTGAGCATGGGTCCGTGAGTAGGAGCCGTAGCCGAGTGAGTTCAGTGTTCAATAGAAGCTCGCGGAGACATAGCAGAACTTGGGTCCGGTTCAAGTTCGAAGTTTTCGGTACCGGTTACTTTGCCATGTAA 1134 0.5961 MNSEAQHGTASYWCYSCTRFVHLSVQTTIACPNCQSDFVEEIRADTSPRHRLSPFPDDPLSLRRQGFRRRRRDAGNRSPFNPVIVLRGPGDDAADHDGASTFELFYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEAQVETDTHCAVCKEAFELHAEARELPCKHIYHPDCILPWLAMRNSCPVCRHELPSDLETRVPSQIDEESIGLTIWRLPGGGFAVGRFSGSRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRNNRVRESRGFGRVIRNFFSFFGRLGNGSRNSSSSSSLSSSYSSSEHGSVSRSRSRVSSVFNRSSRRHSRTWVRFKFEVFGTGYFAM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3230g00006 377 SMART ring_2 177 217 IPR001841 -
Mupr3230g00006 377 SUPERFAMILY RING/U-box 157 225 - -
Mupr3230g00006 377 CDD RING-H2_RNF126-like 177 218 - -
Mupr3230g00006 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 224 IPR013083 -
Mupr3230g00006 377 FunFam E3 ubiquitin-protein ligase RING1-like 139 224 - -
Mupr3230g00006 377 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Mupr3230g00006 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 222 - -
Mupr3230g00006 377 Pfam Ring finger domain 176 218 IPR001841 -
Mupr3230g00006 377 MobiDBLite consensus disorder prediction 48 85 - -
Mupr3230g00006 377 Pfam Protein of unknown function (DUF1117) 238 356 IPR010543 -
Mupr3230g00006 377 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Mupr3230g00006 377 MobiDBLite consensus disorder prediction 318 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3230g00006 Mupr-Chr3230 52119 54153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3230g00006 116 224 C3H Transcription Factor Family AT5G01980 45.872 7.21e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3230g00006 K11982 - gmx:100804867 571.237