Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3207g00003 ATGCAAGCAGCAGCCACTGATGAAGCACCCGAGATTTCCCATCAGAGACAATTTAGCCAGGAAGTGGTGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGATAGCGGACCCAGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGATCTGTAGGGTTTGGCAGCACTAGTGGTGGAAGGGTTCTGGACCATTCACAAAGTTTCACTAAAGGGATTTCATCTTCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAGGGAAATGTAGCAGATGGCGAAAGAAGTTGCCTCCTTAATTCAGACCCCAAGACGGCTGCAGACGGTCCTAATATGACCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCCGCATCAAATCTGTCCCCTTCAGTTTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCGCATAAAGATGTTGACCGTTCTAAGGTTTCAAGGTCCCTTTCCATACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATTCAAACGATGGTTTTCAGTTAATTGACTTTATAATAAACAAATCATCCAAATCAAGGGAACTTTTTATACTTGGCCAATCAGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTAACATTGGTGCATGAAGAATGTTTAATTAAATGGTTTACCACGAAAGGAGATAAGAAATGTGATGTATGTCGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACCAGCTCTGTTCCACGACAAAACAGACAGTTGCAGGGTCAGCAGAACCTACATCCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTCGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAGTTGAAGACTCAAGCTATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCTGTCATCCTGGCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCCCTCGTGGCTTTAACTGTGCATCTATTTTATACTATGTTGCATTTGACGGCCATATATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGGCATCAACTACGCATATATCCAGTTTGTCACTTGGAGACTTCAGGTCTCTCATGATAATAACCCAGTATGA 1356 0.4255 MQAAATDEAPEISHQRQFSQEVVAVPQRNKEVSDSGPSGRRPDISLQVPPRSVGFGSTSGGRVLDHSQSFTKGISSSRGFLRALSFKRKGNVADGERSCLLNSDPKTAADGPNMTSISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSIPGRNVVIVRSVSFSTRSEQEQQDSNDGFQLIDFIINKSSKSRELFILGQSDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFTTKGDKKCDVCRQEVQNLPVTLLRVTSSVPRQNRQLQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHDNNPV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3207g00003 451 CDD RING_CH-C4HC3_MARCH 243 290 - -
Mupr3207g00003 451 SMART ringv_2 242 290 IPR011016 GO:0008270
Mupr3207g00003 451 PANTHER OS02G0165000 PROTEIN 15 446 - -
Mupr3207g00003 451 MobiDBLite consensus disorder prediction 1 65 - -
Mupr3207g00003 451 ProSiteProfiles Zinc finger RING-CH-type profile. 235 296 IPR011016 GO:0008270
Mupr3207g00003 451 SUPERFAMILY RING/U-box 239 293 - -
Mupr3207g00003 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 298 IPR013083 -
Mupr3207g00003 451 MobiDBLite consensus disorder prediction 12 26 - -
Mupr3207g00003 451 Pfam RING-variant domain 243 289 IPR011016 GO:0008270
Mupr3207g00003 451 ProSiteProfiles Zinc finger RING-type profile. 243 290 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3207g00003 Mupr-Chr3207 13826 19252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3207g00003 229 350 C3H Transcription Factor Family AT2G37950 28.788 4.04e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3207g00003 - - gmx:100527094 755.362