Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3158g00003 ATGCAGGCTTGTGTTACCGTGGTGCTGGCGTTAGCCACCGTGGTGGAGGTGGCGACGGTGGCGTGCGGCGGTTTGGCGGGGACTCTTCTTCCTCTGGAGCGGGCCATTCCTCTGAACCAACGAGTGGAATTGGAGGCGCTGAGAGCTCGCGACAGAGCACGGCATGGTCGAATCTTGCAAGGTGGGGTTTCTGGCATCGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGCTGGGTTGTATTTCACGAAAGTGAAGTTGGGATCTCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGCTGAATTGCATTACTTGCAGTAATTGCCCGCAATCTAGTGGGTTAGGGATTGAGCTCAATTTCTTTGACACGGCCGGCTCATCCAGTGCTGCGCTTGTTTCCTGCACAGACCCTATATGTTCTTATGCGGTTCAAACTGCAACGAGTGAATGCTATTCTCAGACTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACATCTGGTTATTATGTTTCTGATACAATGTCTTTTGATTCGATCCTGGGACAAAATGTGGTTTCTAACTCTTCATCTTCCGTCGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGACCAAGACAGAGAAAGCAATCGATGGAATTTTCGGGTTTGGTCCTGGTGCTCTATCTGTTATATCACAATTGTCGTCGCGGGGTGTAACACCCAACGTGTTCTCTCATTGCTTAAAAGGAGAAGACAATGGAGGAGGCGTGCTAGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATAGTCCGCTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACGACTTCTCTCAATTGATTCAGATGTATTTGCTACAGCTAACAATCGAGGAACGATAGTTGACTCTGGCACAACATTGGCTTACCTTGTTCAAGAAGCTTTCGATCCTTTTGTCACTGCTATAACTGCTGCTGTGTCACAGTTTTCGAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGAAATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGAGCATCTATGGTTCTAAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCCCTGTGGTGCATTGGCTTCCAAAAGGTGGAGGAGGGATTCACAATTTTAGGAGGTTCCTTGGCTGTAAACGTCTCTATGGCTACGAGCAAGAGCAGGGATGCATACAGTGCAGGCCAGATAGGTGTGAGCTGCTCCCATAAAGGCACTTTCTCCAAGTTGCTAGCCATAGGCATTACTGTTTCATCCATGGCGGTTCCTCCCTCGGTCGCCGCCGCTCCGGCGTCTCTCTACGTCGGCGACCTCCACCCCGACGTCTCCGACGGCCACCTCGTCGACGCCTTCTCCGACTTCAAGAGCCTCGCCTCCGTTCGCGTCTGCCGAGACTCCGCCACCGGCAAATCCCTCTGTTACGGTTACGTCAACTTCGCTTCTCATCAAGACGCAATTCGTGCAATCGAGTTGAAGAACCATTCCACGCTGAATGGAAAAGTGATAAGGGTGATGTGGTCGCGTCGTGATCCTGATGTGAGGAAAAGCACTATAGGGAACTTGTTTGTTAAGAACTTGCCGGAATTGATAGATAATGCCGGACTGCAAGATATTTTCAAGAAATATGGGAATATTCTGTCCAGCAAAGTTGTCATATCCGACGATGGCAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCAGAAGAGTCTTCAAATGTTGCTATCGAGAAGCTGAATGGCTCTATTTTTGGTGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCTGGCCCCAATGCCAGATATACAAATTTATACATGAAGAATTTGGACCTGGATATTACGGAAGCAACACTGCAGGAAAAGTTTGCTGCTTTTGGCAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAATGGGATGTCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCTGATGGTGCTAAAAAAGCAATGGAAGCAATGAATGGATCGCAATTAGGTTCTAAGATTCTATATGTAGCCAGAGCACAAAAGAAGGCCGAGCGGGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAATGAACAAGTCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGACAACGTAAGTGATGAAGGACTGAGGGATCATTTTAGTGCATGTGGCACTATAACCTCTGCAAAAGTAATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCATTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAGCAAATAGCAGGACTAGCTGGACCTTCGACTGCCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGGCCGGGATGGGGTGCTAATGGCTTTGTACCTCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCAAAGGCAAAACAGGGGCAGGTTGAATGGGCTATCAGTAACACAGGGAAATACTCTCTCTGGTACTTATTTACAACAACCCCAGCCGATTTCTCAGTCAGTGATCGCTTCAAGAGAGTCAAGTACTCAGCAGAGAACTGGACAGGCTAAGTACATTCCTAGTATACGCCAGCGTGACATGGAAAAAGGATCCGGATCCTCATCTGGTGGTTCAATCTCTGGAGGGTCCCAGGGATCAGAAATGCTTCATAGCATGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACATGCTTCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAG 3258 0.4656 MQACVTVVLALATVVEVATVACGGLAGTLLPLERAIPLNQRVELEALRARDRARHGRILQGGVSGIVDFSVQGTSDPYFAGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCITCSNCPQSSGLGIELNFFDTAGSSSAALVSCTDPICSYAVQTATSECYSQTNQCSYTFQYGDGSGTSGYYVSDTMSFDSILGQNVVSNSSSSVVFGCSTYQSGDLTKTEKAIDGIFGFGPGALSVISQLSSRGVTPNVFSHCLKGEDNGGGVLVLGEILEPNIVYSPLVPSQPHYNLNLQSIAVNGRLLSIDSDVFATANNRGTIVDSGTTLAYLVQEAFDPFVTAITAAVSQFSKPIISKGNQCYLVSNSVGEIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAALWCIGFQKVEEGFTILGGSLAVNVSMATSKSRDAYSAGQIGVSCSHKGTFSKLLAIGITVSSMAVPPSVAAAPASLYVGDLHPDVSDGHLVDAFSDFKSLASVRVCRDSATGKSLCYGYVNFASHQDAIRAIELKNHSTLNGKVIRVMWSRRDPDVRKSTIGNLFVKNLPELIDNAGLQDIFKKYGNILSSKVVISDDGKSKGYGFVQFESEESSNVAIEKLNGSIFGDKQLYVGKFVKKSDRILPGPNARYTNLYMKNLDLDITEATLQEKFAAFGKIVSLAIAKDNNGMSKGFGFVNYDNPDGAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRNEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQIAGLAGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLALRPGWGANGFVPPARSFQQSPVPAVSNNTRQQRQNRGRLNGLSVTQGNTLSGTYLQQPQPISQSVIASRESSTQQRTGQAKYIPSIRQRDMEKGSGSSSGGSISGGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAE 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3158g00003 1086 CDD RRM4_I_PABPs 754 832 - -
Mupr3158g00003 1086 SUPERFAMILY PABC (PABP) domain 1002 1076 IPR036053 GO:0003723
Mupr3158g00003 1086 Gene3D Acid Proteases 66 269 IPR021109 -
Mupr3158g00003 1086 Gene3D Acid Proteases 270 426 IPR021109 -
Mupr3158g00003 1086 FunFam Polyadenylate-binding protein 643 737 - -
Mupr3158g00003 1086 Gene3D - 459 560 IPR012677 -
Mupr3158g00003 1086 Gene3D - 642 736 IPR012677 -
Mupr3158g00003 1086 Coils Coil 724 744 - -
Mupr3158g00003 1086 Gene3D - 561 641 IPR012677 -
Mupr3158g00003 1086 PANTHER RNA BINDING PROTEIN 473 535 - -
Mupr3158g00003 1086 SMART rrm2_1 562 634 IPR003954 GO:0003676
Mupr3158g00003 1086 SMART rrm2_1 756 828 IPR003954 GO:0003676
Mupr3158g00003 1086 SMART rrm2_1 653 725 IPR003954 GO:0003676
Mupr3158g00003 1086 MobiDBLite consensus disorder prediction 980 999 - -
Mupr3158g00003 1086 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 755 832 IPR000504 GO:0003723
Mupr3158g00003 1086 FunFam Polyadenylate-binding protein 558 642 - -
Mupr3158g00003 1086 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 551 IPR000504 GO:0003723
Mupr3158g00003 1086 SUPERFAMILY RNA-binding domain, RBD 651 836 IPR035979 GO:0003676
Mupr3158g00003 1086 MobiDBLite consensus disorder prediction 905 999 - -
Mupr3158g00003 1086 SUPERFAMILY RNA-binding domain, RBD 474 640 IPR035979 GO:0003676
Mupr3158g00003 1086 SMART rrm1_1 562 634 IPR000504 GO:0003723
Mupr3158g00003 1086 SMART rrm1_1 756 828 IPR000504 GO:0003723
Mupr3158g00003 1086 SMART rrm1_1 653 725 IPR000504 GO:0003723
Mupr3158g00003 1086 SMART rrm1_1 474 547 IPR000504 GO:0003723
Mupr3158g00003 1086 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Mupr3158g00003 1086 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Mupr3158g00003 1086 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Mupr3158g00003 1086 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 729 IPR000504 GO:0003723
Mupr3158g00003 1086 SMART poly_2 1010 1068 IPR002004 GO:0003723
Mupr3158g00003 1086 ProSiteProfiles Peptidase family A1 domain profile. 83 442 IPR033121 -
Mupr3158g00003 1086 FunFam Aspartic proteinase-like protein 2 66 269 - -
Mupr3158g00003 1086 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 473 1066 IPR006515 GO:0003723
Mupr3158g00003 1086 FunFam Aspartic proteinase-like protein 2 270 424 - -
Mupr3158g00003 1086 FunFam Polyadenylate-binding protein 465 557 - -
Mupr3158g00003 1086 Gene3D - 996 1082 - -
Mupr3158g00003 1086 CDD pepsin_A_like_plant 83 416 IPR034161 -
Mupr3158g00003 1086 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 545 IPR000504 GO:0003723
Mupr3158g00003 1086 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 654 721 IPR000504 GO:0003723
Mupr3158g00003 1086 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 563 631 IPR000504 GO:0003723
Mupr3158g00003 1086 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 757 825 IPR000504 GO:0003723
Mupr3158g00003 1086 Gene3D - 737 841 IPR012677 -
Mupr3158g00003 1086 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 998 1070 IPR002004 GO:0003723
Mupr3158g00003 1086 MobiDBLite consensus disorder prediction 905 971 - -
Mupr3158g00003 1086 Pfam Xylanase inhibitor C-terminal 286 419 IPR032799 -
Mupr3158g00003 1086 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 561 638 IPR000504 GO:0003723
Mupr3158g00003 1086 SUPERFAMILY Acid proteases 78 419 IPR021109 -
Mupr3158g00003 1086 Pfam Poly-adenylate binding protein, unique domain 1006 1065 IPR002004 GO:0003723
Mupr3158g00003 1086 FunFam Polyadenylate-binding protein 738 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3158g00003 Mupr-Chr3158 38096 50622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3158g00003 473 1085 Eukaryotic Initiation Factors Gene Family AT2G36660 52.160 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3158g00003 K13126 - gmx:100779547 1031.94