Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3110g00005 ATGGCCAAGCACCAATTACGTTGCGCAGTCAACTCTGCTTTAAGGAGGTCCCTCGCTGCTTCTTTTGAACTCGGAAACAGAAGAGTTGCCGATGCTTTTCTGGCACTGATTACTGGATATCTGATGGCTGCAAGCTGGGATGGAAGCAATGACCCTGGCAGCCAGTCGGATGATAGCTTTCATTTTGAGAGGTTCCACATTGAGCCTCTGTATGATGCTTTTGTATGTCCACTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTGGAAAATGGACAGACGTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGTAAGGAGAGTGGTCGGAAACTGGTTTGCCCTTTGACTTTGCAAGAATTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGCGAAACACCATTGAAGAGTGGACTGCCAGGAATGAAACTGCACAGCTGGATATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACACTTCGGGCCTTAAAGTACGTCCAGCACATCTGCCGAAGAAGTCGATCGAACAAACACGTGGTTCGGAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGCAAGGTTCGGTGTAGAGCTCTGGAAACCCTTAGGGTTGTGGTAGAGGAAGATGACGAGAATAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACCGTAGTAAAATTCCTCTCGCATGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTATGAGCTCTCAAAATCTGCAGCCCTTTGTGAGAAGATTGGTTCAGTCAATGGAGCCATTCTTATATTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCTCACTGTTGAGAAGGCCGAAAAAACATTGAAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATAGCTGAAAATGGTAGATTGCAGCCTCTTCTGACACAGCTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGATACCTTGGTGAGCTGGTTTTAGACAATGATGTTAAGGTCCTTGTTGCTGGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAGGGCACTAAATCAGATATCATCATGTGACCCAAGTGCAAAGATTTTAATAGAGGCGGGAATACTCTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCCGCTTCCCATGCGATTAAAAGAGATCTCTGCTACAATTCTTGCCAGTGTTGTAAACTCGGGAGAAGACTTCTATTCCATTCCGTTTGGACCTGATCACCAAACACTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAATACTGGTCCAGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACAAATTCTCCAACTACAGTTCTTAGTGTTGTAGCTGCTATCAAAAGCTCTGGTGCCACCATCAGTCTAGTTCAGTTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCACATGGGTCAGGAACTAGCAGATGCACTACGTGGCTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGACTTGGGCCTCACAAGACAGTTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGGCAGGGAGAGATAAGAGGCACTCGCTTCATGACACCATTTCTTGAAGGGCTTGTAAAGATTGTTGCAAGGGCTACATATGTCTTGGCCGAAGAGCCTGATGCAATCGCACTCTGCCGTGATCACAATCTTGCCGCACTCTTTATCGATCTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTCTGGAGAACTTGTCCCAAGAATCAAAAAAATTAACCAAATTACCGGAGGTGCCATCACCAGGTTTTTGTGCTTCTATCTTTTCATGCTTCAGCAAGCAGCCAGTAATAACAGGATTGTGTAGGCTCCACCGAGGGATGTGTTCTTTAAAAGAAACATTTTGTCTGTACGAAGGGCAGGCAGTGCTAAAGCTAGTAGGTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCGGCACTGGCAGCTTTATCAACCTTAATAGATGATGGAGTAGATATTGAACAAGGAGTGGCGATATTGTGTGAGGCAGATGGAGTGAAACCTATAATTGATGTCTTACTTGAGAAACGAACAGATACTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGAGAACAGATGATATAGCCGTTGAAATTTCAGGTGACCAAAATGTCAGTACTGCACTTGTCGATGCTTTCCAGCATGGTGACTATCGAACTAGGCAGACAGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGTATCTTTCCAAATATGGGATGA 2565 0.4472 MAKHQLRCAVNSALRRSLAASFELGNRRVADAFLALITGYLMAASWDGSNDPGSQSDDSFHFERFHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTARNETAQLDMARRSLNMGSPENETLRALKYVQHICRRSRSNKHVVRNAGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSAALCEKIGSVNGAILILVGMTSSKSEDLLTVEKAEKTLKNLEKCENNVRQIAENGRLQPLLTQLLEGPPETKLSMAGYLGELVLDNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCDPSAKILIEAGILSPLVNDLFAVGPNPLPMRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTNSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARATYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSQESKKLTKLPEVPSPGFCASIFSCFSKQPVITGLCRLHRGMCSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILCEADGVKPIIDVLLEKRTDTLRRRAVWAVERLLRTDDIAVEISGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMG 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3110g00005 854 Gene3D - 614 844 IPR011989 -
Mupr3110g00005 854 SMART Ubox_2 73 141 IPR003613 GO:0004842|GO:0016567
Mupr3110g00005 854 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 63 850 - -
Mupr3110g00005 854 SUPERFAMILY RING/U-box 64 151 - -
Mupr3110g00005 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 150 IPR013083 -
Mupr3110g00005 854 SUPERFAMILY ARM repeat 161 485 IPR016024 -
Mupr3110g00005 854 SMART arm_5 348 387 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 631 672 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 307 347 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 713 754 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 180 220 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 758 800 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 222 262 IPR000225 GO:0005515
Mupr3110g00005 854 SMART arm_5 388 433 IPR000225 GO:0005515
Mupr3110g00005 854 Gene3D - 157 356 IPR011989 -
Mupr3110g00005 854 ProSiteProfiles U-box domain profile. 69 148 IPR003613 GO:0004842|GO:0016567
Mupr3110g00005 854 Pfam U-box domain 72 146 IPR003613 GO:0004842|GO:0016567
Mupr3110g00005 854 CDD RING-Ubox_PUB 71 128 IPR045210 -
Mupr3110g00005 854 Gene3D - 357 527 IPR011989 -
Mupr3110g00005 854 Coils Coil 294 317 - -
Mupr3110g00005 854 SUPERFAMILY ARM repeat 499 842 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3110g00005 Mupr-Chr3110 39772 44851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3110g00005 43 854 U-box Gene Family AT1G76390 64.988 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3110g00005 - - gmx:100789746 1501.49